Variant report

Variant	rs3821164
Chromosome Location	chr2:36624137-36624138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36622875..36625167-chr2:36629133..36630867,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11124512	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11673762	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1523788	0.84[EUR][1000 genomes]
rs17018688	1.00[CHB][hapmap];0.96[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17018699	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17018723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2110928	0.84[EUR][1000 genomes]
rs2192920	0.93[EUR][1000 genomes]
rs3770883	0.87[CHB][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes]
rs3770884	0.82[CHB][hapmap];0.96[JPT][hapmap]
rs3770887	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3770888	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs3770891	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs3770897	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3770899	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3770903	0.89[EUR][1000 genomes]
rs3770910	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770914	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770922	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770926	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770927	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770930	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770937	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670552	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs56036545	0.83[AMR][1000 genomes]
rs57785523	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs876458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
5	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:36616800-36624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:36616800-36631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:36617200-36625000	Weak transcription	Fetal Intestine Small	intestine
11	chr2:36617200-36630800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:36617200-36631200	Weak transcription	Fetal Kidney	kidney
13	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
14	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
17	chr2:36619800-36625400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:36620200-36626400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:36620200-36635000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:36620800-36629200	Genic enhancers	Muscle Satellite Cultured Cells	--
21	chr2:36621000-36630600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr2:36621000-36631400	Weak transcription	Fetal Brain Female	brain
23	chr2:36621000-36635000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr2:36621000-36635200	Weak transcription	Lung	lung
25	chr2:36621200-36624200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:36621200-36625000	Weak transcription	Right Ventricle	heart
27	chr2:36621200-36628000	Weak transcription	Ovary	ovary
28	chr2:36621200-36629000	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:36621200-36630800	Weak transcription	Spleen	Spleen
30	chr2:36621200-36634800	Weak transcription	Brain Hippocampus Middle	brain
31	chr2:36621200-36634800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr2:36621200-36635000	Weak transcription	Fetal Stomach	stomach
33	chr2:36622000-36626400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr2:36622200-36624800	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr2:36622600-36624200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr2:36622600-36624600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:36622600-36624800	Genic enhancers	HSMM	muscle
38	chr2:36622600-36628000	Genic enhancers	NHDF-Ad	bronchial
39	chr2:36622600-36630600	Genic enhancers	HUVEC	blood vessel
40	chr2:36622800-36624600	Genic enhancers	NHEK	skin
41	chr2:36622800-36625200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:36622800-36629000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:36622800-36629400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr2:36622800-36630600	Weak transcription	Colon Smooth Muscle	Colon
45	chr2:36622800-36631400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr2:36623000-36624200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:36623000-36624600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:36623000-36632200	Weak transcription	Right Atrium	heart
49	chr2:36623200-36625200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:36623400-36626000	Enhancers	Stomach Mucosa	stomach

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