Variant report

Variant	rs3770884
Chromosome Location	chr2:36669071-36669072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11124512	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs11673762	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1477048	0.81[CEU][hapmap];0.97[EUR][1000 genomes]
rs17018688	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs17018699	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs17018723	0.82[CHB][hapmap];0.96[JPT][hapmap]
rs17018790	0.93[EUR][1000 genomes]
rs17018798	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2276673	0.98[EUR][1000 genomes]
rs34439217	0.97[EUR][1000 genomes]
rs3770883	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3770885	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3770886	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3770887	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770888	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770891	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770897	0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs3770899	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs3770910	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770914	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs3770922	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs3770927	0.87[CHB][hapmap];0.96[JPT][hapmap]
rs3821157	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3821164	0.82[CHB][hapmap];0.96[JPT][hapmap]
rs4670552	0.81[JPT][hapmap]
rs56036545	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57431226	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57785523	0.80[AFR][1000 genomes]
rs58185473	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62136162	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6729186	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7571902	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs876458	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
9	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:36660800-36669600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
14	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:36661000-36669200	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:36661000-36669800	Weak transcription	Fetal Brain Male	brain
18	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
20	chr2:36665200-36672000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:36666000-36669200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:36666200-36669200	Genic enhancers	HMEC	breast
23	chr2:36666200-36670600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
25	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
27	chr2:36666400-36686800	Weak transcription	Gastric	stomach
28	chr2:36666600-36669800	Weak transcription	Brain Anterior Caudate	brain
29	chr2:36666600-36675600	Strong transcription	NHEK	skin
30	chr2:36666600-36683400	Genic enhancers	NHLF	lung
31	chr2:36666800-36669600	Weak transcription	Right Ventricle	heart
32	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:36667200-36671800	Strong transcription	NH-A	brain
34	chr2:36667600-36669200	Enhancers	Rectal Smooth Muscle	rectum
35	chr2:36667600-36669400	Enhancers	Colon Smooth Muscle	Colon
36	chr2:36667800-36669800	Weak transcription	Psoas Muscle	Psoas
37	chr2:36667800-36670000	Enhancers	Primary hematopoietic stem cells	blood
38	chr2:36667800-36672400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:36667800-36672600	Strong transcription	HepG2	liver
40	chr2:36668000-36669400	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr2:36668000-36672000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:36668000-36672600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
44	chr2:36668200-36669200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:36668200-36669400	Genic enhancers	Adipose Nuclei	Adipose
46	chr2:36668200-36669800	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr2:36668200-36669800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:36668200-36670800	Genic enhancers	HSMM	muscle
49	chr2:36668200-36671600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr2:36668200-36672200	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links