Variant report

Variant	rs7571902
Chromosome Location	chr2:36665548-36665549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11673762	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11682688	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1477048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523788	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17018790	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs17018798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110928	0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276673	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34439217	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770884	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs3770885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3770887	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs3770888	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3770891	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3770903	0.86[ASN][1000 genomes]
rs3821157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56036545	0.99[EUR][1000 genomes]
rs57393342	0.89[ASN][1000 genomes]
rs57431226	1.00[EUR][1000 genomes]
rs58185473	1.00[EUR][1000 genomes]
rs62136162	1.00[EUR][1000 genomes]
rs6729186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs848498	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.90[ASN][1000 genomes]
rs848500	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs848501	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs848503	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.87[ASN][1000 genomes]
rs848507	0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36644400-36665600	Weak transcription	Gastric	stomach
3	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
4	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
5	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
8	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:36657000-36665600	Genic enhancers	A549	lung
12	chr2:36658000-36668400	Weak transcription	Esophagus	oesophagus
13	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:36660600-36666200	Weak transcription	Pancreas	Pancrea
15	chr2:36660600-36668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:36660600-36668200	Weak transcription	Fetal Intestine Large	intestine
17	chr2:36660600-36668400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:36660600-36668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr2:36660600-36668600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
23	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:36660800-36665600	Weak transcription	Placenta	Placenta
26	chr2:36660800-36665600	Weak transcription	Ovary	ovary
27	chr2:36660800-36665600	Weak transcription	Right Ventricle	heart
28	chr2:36660800-36666000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr2:36660800-36666200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:36660800-36666200	Weak transcription	Lung	lung
31	chr2:36660800-36668000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:36660800-36668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:36660800-36668400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:36660800-36668400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:36660800-36668400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr2:36660800-36668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:36660800-36668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:36660800-36668600	Weak transcription	Spleen	Spleen
39	chr2:36660800-36669600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
42	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:36661000-36665600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr2:36661000-36665600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:36661000-36665600	Weak transcription	Hela-S3	cervix
47	chr2:36661000-36668400	Weak transcription	Fetal Stomach	stomach
48	chr2:36661000-36668600	Weak transcription	Fetal Kidney	kidney
49	chr2:36661000-36669200	Weak transcription	Brain Hippocampus Middle	brain
50	chr2:36661000-36669800	Weak transcription	Fetal Brain Male	brain

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