Variant report

Variant	rs848501
Chromosome Location	chr2:36659149-36659150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36605517..36607622-chr2:36658577..36660490,2	MCF-7	breast:
2	chr2:36653170..36656260-chr2:36656340..36659341,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11682688	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1477048	0.96[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1523788	0.91[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs17018798	0.96[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs2110928	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2276673	0.87[ASN][1000 genomes]
rs34439217	0.90[ASN][1000 genomes]
rs3770885	0.96[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3770886	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3770903	0.81[ASN][1000 genomes]
rs3770955	0.84[JPT][hapmap]
rs3821157	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs57393342	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6729186	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs7571902	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs848498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs848500	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs848503	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs848507	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
4	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:36644400-36665600	Weak transcription	Gastric	stomach
6	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
7	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
9	chr2:36648200-36660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:36648200-36660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:36648600-36659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:36650600-36659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
15	chr2:36651600-36659600	Weak transcription	Fetal Intestine Large	intestine
16	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
17	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr2:36651800-36660200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
21	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
22	chr2:36652400-36660200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:36652400-36660200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:36654600-36660200	Genic enhancers	Muscle Satellite Cultured Cells	--
27	chr2:36654800-36660800	Enhancers	Ovary	ovary
28	chr2:36655200-36660400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr2:36655400-36659600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr2:36655400-36659800	Weak transcription	NH-A	brain
31	chr2:36655400-36662600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr2:36655800-36659400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:36656800-36659600	Weak transcription	HMEC	breast
34	chr2:36656800-36660200	Enhancers	Adipose Nuclei	Adipose
35	chr2:36656800-36660200	Weak transcription	HSMMtube	muscle
36	chr2:36656800-36661000	Enhancers	Fetal Stomach	stomach
37	chr2:36657000-36659800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:36657000-36660400	Weak transcription	Hela-S3	cervix
39	chr2:36657000-36665600	Genic enhancers	A549	lung
40	chr2:36657200-36660000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr2:36657200-36660200	Enhancers	Rectal Smooth Muscle	rectum
42	chr2:36657200-36660400	Enhancers	Colon Smooth Muscle	Colon
43	chr2:36657400-36659600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:36657600-36659600	Weak transcription	Fetal Heart	heart
45	chr2:36657600-36661200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr2:36657600-36661600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr2:36657800-36659800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr2:36657800-36660000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr2:36657800-36660200	Weak transcription	Liver	Liver
50	chr2:36658000-36659600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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