Variant report

Variant	rs3770883
Chromosome Location	chr2:36670742-36670743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11124512	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11673762	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11682688	0.85[EUR][1000 genomes]
rs1523788	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17018688	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs17018699	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17018723	0.87[CHB][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes]
rs17018798	0.81[EUR][1000 genomes]
rs2110928	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2192920	0.90[EUR][1000 genomes]
rs2276673	0.81[EUR][1000 genomes]
rs3755207	0.85[EUR][1000 genomes]
rs3770884	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3770885	0.81[EUR][1000 genomes]
rs3770886	0.81[EUR][1000 genomes]
rs3770887	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770888	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3770891	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770897	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770899	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770903	0.93[EUR][1000 genomes]
rs3770910	0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3770914	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770922	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs3770926	0.85[EUR][1000 genomes]
rs3770927	0.91[CHB][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes]
rs3770930	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3821157	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3821164	0.87[CHB][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes]
rs4670552	0.81[JPT][hapmap]
rs56036545	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57431226	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57785523	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58185473	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62136162	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6729186	0.81[EUR][1000 genomes]
rs876458	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
11	chr2:36665200-36672000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
13	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
15	chr2:36666400-36686800	Weak transcription	Gastric	stomach
16	chr2:36666600-36675600	Strong transcription	NHEK	skin
17	chr2:36666600-36683400	Genic enhancers	NHLF	lung
18	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:36667200-36671800	Strong transcription	NH-A	brain
20	chr2:36667800-36672400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:36667800-36672600	Strong transcription	HepG2	liver
22	chr2:36668000-36672000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:36668000-36672600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
25	chr2:36668200-36670800	Genic enhancers	HSMM	muscle
26	chr2:36668200-36671600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:36668200-36672200	Strong transcription	Fetal Intestine Large	intestine
28	chr2:36668200-36676400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:36668200-36677200	Strong transcription	Hela-S3	cervix
30	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
31	chr2:36668400-36671400	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr2:36668400-36671600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr2:36668400-36672000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr2:36668400-36672600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:36668400-36673000	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr2:36668600-36670800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:36668600-36671400	Genic enhancers	Fetal Kidney	kidney
38	chr2:36668600-36672000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:36668600-36672600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr2:36668600-36677400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr2:36668800-36671000	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr2:36668800-36672400	Weak transcription	Spleen	Spleen
43	chr2:36668800-36672600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:36668800-36673800	Weak transcription	Liver	Liver
45	chr2:36668800-36673800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr2:36668800-36674600	Weak transcription	Right Atrium	heart
47	chr2:36668800-36676000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:36668800-36676600	Strong transcription	Placenta	Placenta
49	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr2:36669000-36672400	Genic enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links