Variant report

Variant	rs3757027
Chromosome Location	chr6:161677084-161677085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161674461..161678677-chr6:161680963..161683870,6	K562	blood:
2	chr6:161666263..161668529-chr6:161675962..161677807,2	K562	blood:
3	chr6:161648859..161650447-chr6:161676937..161679917,2	K562	blood:
4	chr6:161666914..161669377-chr6:161675645..161677713,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11963044	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs34165764	1.00[EUR][1000 genomes]
rs3757029	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3798958	0.95[ASN][1000 genomes]
rs61649610	1.00[EUR][1000 genomes]
rs6920768	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73782826	1.00[EUR][1000 genomes]
rs73782827	1.00[EUR][1000 genomes]
rs73782830	1.00[EUR][1000 genomes]
rs7742683	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746770	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv533149	chr6:161653240-161769727	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
3	chr6:161653800-161693800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:161655800-161680400	Weak transcription	HMEC	breast
5	chr6:161657600-161677400	Weak transcription	Ovary	ovary
6	chr6:161657600-161683600	Weak transcription	HSMMtube	muscle
7	chr6:161657600-161693600	Weak transcription	Left Ventricle	heart
8	chr6:161659400-161687200	Weak transcription	Esophagus	oesophagus
9	chr6:161664600-161680400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:161664800-161677800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:161664800-161680600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:161664800-161688000	Weak transcription	Fetal Intestine Large	intestine
13	chr6:161664800-161689400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:161664800-161693800	Weak transcription	HSMM	muscle
15	chr6:161665000-161678400	Weak transcription	NH-A	brain
16	chr6:161665000-161693600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:161665200-161681600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:161665200-161692600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:161666000-161679600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:161666400-161680200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:161666400-161692600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:161666600-161677800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:161666800-161694200	Weak transcription	Aorta	Aorta
24	chr6:161667000-161684200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:161668200-161680600	Weak transcription	Primary T cells from cord blood	blood
26	chr6:161670800-161692600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:161671200-161689400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:161672800-161679600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:161672800-161680400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:161672800-161680400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:161672800-161680600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:161672800-161694200	Weak transcription	Lung	lung
33	chr6:161672800-161694200	Weak transcription	Right Ventricle	heart
34	chr6:161673000-161679600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:161673400-161679000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:161673800-161678000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:161673800-161678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:161673800-161680400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:161674000-161692200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:161675000-161682200	Weak transcription	NHEK	skin
41	chr6:161675200-161678000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:161675200-161678600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:161675400-161677200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:161675400-161677400	Enhancers	Brain Substantia Nigra	brain
45	chr6:161675400-161679200	Enhancers	Brain Hippocampus Middle	brain
46	chr6:161675600-161677400	Enhancers	Brain Angular Gyrus	brain
47	chr6:161675600-161677600	Enhancers	Fetal Brain Female	brain
48	chr6:161675800-161677600	Enhancers	Fetal Brain Male	brain
49	chr6:161675800-161678400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:161676000-161693800	Weak transcription	Adipose Nuclei	Adipose

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