Variant report

Variant	rs7742683
Chromosome Location	chr6:161665738-161665739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161407945..161411607-chr6:161664296..161666241,4	K562	blood:
2	chr6:161654520..161656556-chr6:161665296..161667922,2	K562	blood:
3	chr6:161644500..161646792-chr6:161664234..161665888,2	K562	blood:
4	chr6:161656907..161658556-chr6:161664328..161666054,2	K562	blood:
5	chr6:161588978..161591951-chr6:161662641..161667563,4	K562	blood:
6	chr6:161661680..161663432-chr6:161664837..161669283,4	K562	blood:
7	chr6:161409622..161412809-chr6:161664547..161667917,4	K562	blood:
8	chr6:161546370..161547921-chr6:161664513..161666018,2	K562	blood:
9	chr6:161652594..161655278-chr6:161664040..161666142,3	K562	blood:
10	chr6:161658815..161662379-chr6:161662479..161666320,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11963044	1.00[EUR][1000 genomes]
rs16892343	0.86[AFR][1000 genomes]
rs34165764	1.00[EUR][1000 genomes]
rs3757027	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757029	1.00[ASN][1000 genomes]
rs3778233	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3798958	0.95[ASN][1000 genomes]
rs61649610	1.00[EUR][1000 genomes]
rs6920768	1.00[EUR][1000 genomes]
rs73782826	1.00[EUR][1000 genomes]
rs73782827	1.00[EUR][1000 genomes]
rs73782830	1.00[EUR][1000 genomes]
rs7746770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv533149	chr6:161653240-161769727	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
4	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
5	chr6:161651000-161677000	Weak transcription	Spleen	Spleen
6	chr6:161651200-161666000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:161653800-161693800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:161655800-161680400	Weak transcription	HMEC	breast
9	chr6:161656000-161666200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:161656200-161665800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:161656200-161675600	Weak transcription	NHLF	lung
12	chr6:161657600-161665800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:161657600-161666000	Weak transcription	Fetal Stomach	stomach
14	chr6:161657600-161677400	Weak transcription	Ovary	ovary
15	chr6:161657600-161683600	Weak transcription	HSMMtube	muscle
16	chr6:161657600-161693600	Weak transcription	Left Ventricle	heart
17	chr6:161657800-161669000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:161659400-161687200	Weak transcription	Esophagus	oesophagus
19	chr6:161659600-161672200	Weak transcription	Fetal Heart	heart
20	chr6:161660000-161666200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:161660800-161666000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:161661600-161666000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:161663200-161666000	Enhancers	Brain Substantia Nigra	brain
24	chr6:161663400-161666000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:161663600-161666000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:161663800-161666400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:161664000-161666400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:161664200-161665800	Enhancers	Fetal Brain Female	brain
29	chr6:161664200-161666400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:161664200-161666400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:161664200-161666600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:161664200-161667200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:161664400-161665800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:161664400-161666000	Enhancers	Brain Cingulate Gyrus	brain
35	chr6:161664400-161666600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:161664400-161666800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:161664600-161665800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:161664600-161680400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:161664800-161665800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:161664800-161665800	Enhancers	Brain Anterior Caudate	brain
41	chr6:161664800-161666000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:161664800-161666000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:161664800-161666000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr6:161664800-161666400	Weak transcription	Placenta	Placenta
45	chr6:161664800-161667600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:161664800-161669800	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:161664800-161670200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:161664800-161672600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:161664800-161672600	Weak transcription	Lung	lung
50	chr6:161664800-161676000	Weak transcription	Gastric	stomach

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