Variant report

Variant	rs3778233
Chromosome Location	chr6:161672834-161672835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161671070..161673018-chr6:161681937..161684753,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11963044	1.00[EUR][1000 genomes]
rs16892343	0.85[YRI][hapmap]
rs34165764	1.00[EUR][1000 genomes]
rs3757027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3798958	0.91[ASN][1000 genomes]
rs61649610	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6920768	1.00[EUR][1000 genomes]
rs73782826	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73782827	1.00[EUR][1000 genomes]
rs73782830	1.00[EUR][1000 genomes]
rs7742683	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746770	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv533149	chr6:161653240-161769727	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
3	chr6:161651000-161677000	Weak transcription	Spleen	Spleen
4	chr6:161653800-161693800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:161655800-161680400	Weak transcription	HMEC	breast
6	chr6:161656200-161675600	Weak transcription	NHLF	lung
7	chr6:161657600-161677400	Weak transcription	Ovary	ovary
8	chr6:161657600-161683600	Weak transcription	HSMMtube	muscle
9	chr6:161657600-161693600	Weak transcription	Left Ventricle	heart
10	chr6:161659400-161687200	Weak transcription	Esophagus	oesophagus
11	chr6:161664600-161680400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:161664800-161676000	Weak transcription	Gastric	stomach
13	chr6:161664800-161677800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:161664800-161680600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:161664800-161688000	Weak transcription	Fetal Intestine Large	intestine
16	chr6:161664800-161689400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:161664800-161693800	Weak transcription	HSMM	muscle
18	chr6:161665000-161675800	Weak transcription	Fetal Brain Male	brain
19	chr6:161665000-161678400	Weak transcription	NH-A	brain
20	chr6:161665000-161693600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:161665200-161681600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:161665200-161692600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:161665400-161675600	Weak transcription	Brain Germinal Matrix	brain
24	chr6:161665600-161675600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:161665800-161675800	Weak transcription	Brain Anterior Caudate	brain
26	chr6:161666000-161675400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:161666000-161675600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:161666000-161679600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:161666400-161675800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:161666400-161676200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:161666400-161680200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:161666400-161692600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:161666600-161677800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:161666800-161675400	Weak transcription	Fetal Stomach	stomach
35	chr6:161666800-161694200	Weak transcription	Aorta	Aorta
36	chr6:161667000-161684200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:161667200-161675800	Weak transcription	Placenta	Placenta
38	chr6:161668200-161674800	Weak transcription	Brain Substantia Nigra	brain
39	chr6:161668200-161674800	Weak transcription	K562	blood
40	chr6:161668200-161680600	Weak transcription	Primary T cells from cord blood	blood
41	chr6:161670800-161675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:161670800-161676800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:161670800-161692600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:161671200-161675400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:161671200-161677000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:161671200-161677000	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:161671200-161689400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:161671400-161675200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:161671800-161673200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:161671800-161673800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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