Variant report

Variant	rs3757193
Chromosome Location	chr6:166923463-166923464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10214537	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12528147	0.88[EUR][1000 genomes]
rs12528167	0.81[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs35302651	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3778409	1.00[YRI][hapmap]
rs3778412	0.93[GIH][hapmap];1.00[YRI][hapmap]
rs3778418	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3778422	0.81[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3799632	0.93[GIH][hapmap]
rs3799647	0.93[GIH][hapmap];1.00[YRI][hapmap]
rs3799654	0.88[EUR][1000 genomes]
rs3799658	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3799667	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3799670	0.89[MKK][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs55665778	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7765185	0.81[CEU][hapmap]
rs9364856	1.00[YRI][hapmap]
rs9457174	0.81[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:166894800-166928400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:166899400-166929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:166902400-166923600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:166903000-166925400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:166904000-166923800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:166905000-166925200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:166905000-166928200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:166905000-166928400	Weak transcription	HSMM	muscle
13	chr6:166906600-166923800	Strong transcription	Fetal Stomach	stomach
14	chr6:166906600-166925000	Strong transcription	Adipose Nuclei	Adipose
15	chr6:166906600-166925200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:166909400-166928400	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
18	chr6:166910800-166923800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:166911200-166928200	Weak transcription	NH-A	brain
20	chr6:166911400-166924400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:166911800-166923800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr6:166912200-166927600	Weak transcription	HMEC	breast
23	chr6:166912200-166931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:166913000-166929000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
26	chr6:166916000-166923800	Strong transcription	NHLF	lung
27	chr6:166916000-166925000	Strong transcription	Brain Cingulate Gyrus	brain
28	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
29	chr6:166916400-166940400	Weak transcription	Fetal Heart	heart
30	chr6:166916600-166923600	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:166916600-166924800	Strong transcription	Right Ventricle	heart
32	chr6:166916600-166924800	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:166916600-166925400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:166917200-166932000	Weak transcription	Primary B cells from cord blood	blood
35	chr6:166917400-166927400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:166917800-166928400	Weak transcription	NHEK	skin
37	chr6:166918000-166925600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:166918000-166928200	Weak transcription	Fetal Intestine Small	intestine
39	chr6:166918000-166928600	Weak transcription	HUVEC	blood vessel
40	chr6:166918200-166928600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:166918400-166931400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:166919200-166923800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr6:166919200-166928600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:166920000-166923600	Strong transcription	Brain Hippocampus Middle	brain
45	chr6:166920000-166923800	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:166921200-166930000	Weak transcription	Fetal Intestine Large	intestine
47	chr6:166921400-166926200	Strong transcription	Osteobl	bone
48	chr6:166921400-166930000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:166921400-166930200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:166921400-166943600	Weak transcription	Fetal Lung	lung

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