Variant report

Variant	rs3799670
Chromosome Location	chr6:166922813-166922814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10214537	1.00[YRI][hapmap]
rs12528167	1.00[YRI][hapmap]
rs3757193	0.89[MKK][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs3778409	1.00[YRI][hapmap]
rs3778412	0.82[MEX][hapmap];1.00[YRI][hapmap]
rs3778418	0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs3778422	0.93[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3799632	1.00[MEX][hapmap]
rs3799647	0.82[MEX][hapmap];1.00[YRI][hapmap]
rs3799658	1.00[YRI][hapmap]
rs3799667	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9364856	1.00[YRI][hapmap]
rs9457174	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
6	esv3379494	chr6:166918862-166923360	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:166893000-166923200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:166894800-166928400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:166899400-166929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:166902400-166923600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:166903000-166925400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:166904000-166923800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:166905000-166925200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:166905000-166928200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:166905000-166928400	Weak transcription	HSMM	muscle
14	chr6:166906600-166923200	Strong transcription	Gastric	stomach
15	chr6:166906600-166923800	Strong transcription	Fetal Stomach	stomach
16	chr6:166906600-166925000	Strong transcription	Adipose Nuclei	Adipose
17	chr6:166906600-166925200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:166907000-166923200	Strong transcription	Fetal Brain Female	brain
19	chr6:166907800-166923000	Strong transcription	Lung	lung
20	chr6:166909400-166928400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
22	chr6:166910400-166923200	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:166910600-166923400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:166910800-166923800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:166911000-166923200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:166911200-166928200	Weak transcription	NH-A	brain
27	chr6:166911400-166924400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:166911800-166923800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr6:166912200-166927600	Weak transcription	HMEC	breast
30	chr6:166912200-166931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:166913000-166929000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
33	chr6:166916000-166923800	Strong transcription	NHLF	lung
34	chr6:166916000-166925000	Strong transcription	Brain Cingulate Gyrus	brain
35	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
36	chr6:166916400-166940400	Weak transcription	Fetal Heart	heart
37	chr6:166916600-166923600	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:166916600-166924800	Strong transcription	Right Ventricle	heart
39	chr6:166916600-166924800	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:166916600-166925400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:166916800-166923200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:166917000-166923000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:166917200-166932000	Weak transcription	Primary B cells from cord blood	blood
44	chr6:166917400-166927400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:166917800-166923000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:166917800-166928400	Weak transcription	NHEK	skin
47	chr6:166918000-166925600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:166918000-166928200	Weak transcription	Fetal Intestine Small	intestine
49	chr6:166918000-166928600	Weak transcription	HUVEC	blood vessel
50	chr6:166918200-166928600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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