Variant report

Variant	rs3764314
Chromosome Location	chr16:72127078-72127079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr16:72126783-72128085	HepG2	liver:	n/a	n/a
2	SIN3A	chr16:72126770-72128640	H1-hESC	embryonic stem cell:	n/a	chr16:72127343-72127351 chr16:72127337-72127350
3	POLR2A	chr16:72126738-72128525	Hela-S3	cervix:	n/a	n/a
4	TAF1	chr16:72126780-72128439	H1-hESC	embryonic stem cell:	n/a	n/a
5	CHD2	chr16:72126842-72128038	Hela-S3	cervix:	n/a	n/a
6	GABPA	chr16:72126579-72128509	A549	lung:	n/a	chr16:72127456-72127470
7	MXI1	chr16:72126947-72128235	Hela-S3	cervix:	n/a	n/a
8	MAX	chr16:72126970-72128038	SK-N-SH	brain:	n/a	chr16:72127351-72127360
9	RUNX3	chr16:72127065-72128149	GM12878	blood:	n/a	n/a
10	POLR2A	chr16:72126993-72128337	Hela-S3	cervix:	n/a	n/a
11	MXI1	chr16:72126820-72128414	HepG2	liver:	n/a	n/a
12	POLR2A	chr16:72126890-72128507	IMR90	lung:	n/a	n/a
13	POLR2A	chr16:72126883-72128394	GM12892	blood:	n/a	n/a
14	PML	chr16:72126842-72128497	GM12878	blood:	n/a	n/a
15	RCOR1	chr16:72126867-72127480	K562	blood:	n/a	n/a
16	MAX	chr16:72126746-72128157	A549	lung:	n/a	chr16:72127351-72127360
17	POLR2A	chr16:72126793-72128416	Hela-S3	cervix:	n/a	n/a
18	GABPA	chr16:72126596-72128376	MCF-7	breast:	n/a	chr16:72127456-72127470
19	POLR2A	chr16:72126706-72128450	K562	blood:	n/a	n/a
20	POLR2A	chr16:72126810-72128394	K562	blood:	n/a	n/a
21	MXI1	chr16:72126245-72128714	SK-N-SH	brain:	n/a	n/a
22	RCOR1	chr16:72126650-72128249	Hela-S3	cervix:	n/a	n/a
23	PBX3	chr16:72126596-72127157	SK-N-SH	brain:	n/a	chr16:72126862-72126882
24	MXI1	chr16:72126742-72128794	IMR90	lung:	n/a	n/a
25	POLR2A	chr16:72126782-72127108	Hela-S3	cervix:	n/a	n/a
26	CHD2	chr16:72127069-72128203	GM12878	blood:	n/a	n/a
27	NR2F2	chr16:72126851-72128172	K562	blood:	n/a	n/a
28	ZKSCAN1	chr16:72126836-72128066	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr16:72126862-72128384	Raji	blood:	n/a	n/a
30	MYC	chr16:72126658-72128113	K562	blood:	n/a	chr16:72127351-72127360
31	POLR2A	chr16:72126453-72128718	GM12878	blood:	n/a	n/a
32	GABPA	chr16:72126637-72128318	SK-N-SH	brain:	n/a	chr16:72127456-72127470
33	GABPA	chr16:72126730-72128257	A549	lung:	n/a	chr16:72127456-72127470
34	HCFC1	chr16:72126858-72128345	K562	blood:	n/a	n/a
35	MYC	chr16:72127069-72128126	NB4	blood:	n/a	chr16:72127351-72127360
36	NFYA	chr16:72126454-72127146	Hela-S3	cervix:	n/a	n/a
37	MAX	chr16:72126802-72128210	MCF-7	breast:	n/a	chr16:72127351-72127360
38	RELA	chr16:72126928-72128286	GM15510	blood:	n/a	n/a
39	NFYA	chr16:72126501-72127105	K562	blood:	n/a	n/a
40	RCOR1	chr16:72127012-72128317	HepG2	liver:	n/a	n/a
41	NFYB	chr16:72126776-72127898	K562	blood:	n/a	chr16:72127664-72127674 chr16:72127663-72127678 chr16:72127663-72127676
42	MXI1	chr16:72127014-72128380	GM12878	blood:	n/a	n/a
43	ELF1	chr16:72126957-72128292	MCF-7	breast:	n/a	n/a
44	POLR2A	chr16:72126745-72128568	H1-hESC	embryonic stem cell:	n/a	n/a
45	GABPA	chr16:72126540-72128603	MCF-7	breast:	n/a	chr16:72127456-72127470
46	CREB1	chr16:72126656-72128309	HepG2	liver:	n/a	n/a
47	MAZ	chr16:72126608-72128330	K562	blood:	n/a	chr16:72127351-72127360
48	TBP	chr16:72126935-72128478	K562	blood:	n/a	n/a
49	MAX	chr16:72126862-72128069	A549	lung:	n/a	chr16:72127351-72127360
50	POLR2A	chr16:72127057-72128195	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:72117553..72119364-chr16:72127046..72129363,2	MCF-7	breast:
2	chr16:72087766..72090367-chr16:72125547..72128434,2	K562	blood:
3	chr16:72126810..72127382-chr5:52284450..52285224,2	Hela-S3	cervix:
4	chr16:72099750..72107853-chr16:72126502..72131093,10	MCF-7	breast:
5	chr16:72042306..72048206-chr16:72125753..72130155,8	MCF-7	breast:
6	chr16:72127015..72130100-chr16:72137516..72139899,4	MCF-7	breast:
7	chr16:72040983..72044286-chr16:72126039..72129128,5	MCF-7	breast:
8	chr16:72042016..72045516-chr16:72126835..72130601,4	K562	blood:
9	chr16:72049013..72051278-chr16:72125940..72127742,2	MCF-7	breast:
10	chr16:72088867..72091285-chr16:72125547..72127887,2	K562	blood:
11	chr11:62358922..62359848-chr16:72127020..72128328,4	Hela-S3	cervix:
12	chr16:71840719..71844104-chr16:72124883..72128411,3	K562	blood:

Variant related genes	Relation type
DHX38	TF binding region
ENSG00000261701	Chromatin interaction
ENSG00000257017	Chromatin interaction
ENSG00000140829	Chromatin interaction
ENSG00000255508	Chromatin interaction
ENSG00000260252	Chromatin interaction
ENSG00000166747	Chromatin interaction
ENSG00000102967	Chromatin interaction
ENSG00000164171	Chromatin interaction
ENSG00000149016	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1035559	0.87[GIH][hapmap]
rs10492813	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10492814	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1050361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1050362	0.82[ASW][hapmap];0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1050363	0.81[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10852511	0.84[JPT][hapmap]
rs11862813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11864453	0.87[GIH][hapmap]
rs12325142	0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12445586	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12448315	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12449073	0.81[YRI][hapmap]
rs12708925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12708926	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12708927	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12708928	0.80[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12924413	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12928732	0.90[JPT][hapmap]
rs12930702	0.81[ASN][1000 genomes]
rs12932845	0.80[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13334151	0.90[JPT][hapmap]
rs1465457	0.93[YRI][hapmap]
rs16973716	0.80[JPT][hapmap]
rs2000999	0.81[GIH][hapmap];0.90[JPT][hapmap]
rs2070937	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs2070939	0.82[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs2072141	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2072142	0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2074626	0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2074627	0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs217181	1.00[YRI][hapmap]
rs2240243	0.80[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2241411	0.86[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs2241412	0.82[ASW][hapmap];0.92[CEU][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2269918	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2288000	0.82[CHB][hapmap]
rs2288002	0.82[CHB][hapmap];0.85[CHD][hapmap];0.80[JPT][hapmap]
rs2303285	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2550035	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2550038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2550868	0.86[CHB][hapmap];0.87[CHD][hapmap];0.80[JPT][hapmap]
rs2854956	0.84[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3764311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764312	0.81[ASW][hapmap];0.91[CEU][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3812986	0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs3812987	0.95[JPT][hapmap]
rs3844425	0.81[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs3852781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852782	0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap]
rs3852784	0.81[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap]
rs3890860	0.82[AFR][1000 genomes]
rs3902135	0.90[JPT][hapmap]
rs4788461	0.83[ASN][1000 genomes]
rs4788609	0.81[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap]
rs4788610	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs6499557	0.82[ASN][1000 genomes]
rs6499559	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6499560	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6499561	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6499562	0.80[JPT][hapmap]
rs6680	0.81[ASW][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7184169	0.95[JPT][hapmap]
rs7185407	0.86[GIH][hapmap]
rs7188058	0.90[JPT][hapmap]
rs7190995	0.92[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7191127	0.92[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7192730	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7194397	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194668	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7198572	0.90[JPT][hapmap]
rs7199261	0.80[ASN][1000 genomes]
rs7200854	0.82[ASN][1000 genomes]
rs7201643	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs7203426	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7203821	0.90[CHD][hapmap];0.81[JPT][hapmap]
rs7940	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs8043606	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8044555	0.95[JPT][hapmap]
rs8044868	0.80[JPT][hapmap]
rs8047377	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8050238	0.95[JPT][hapmap]
rs8051882	0.82[ASW][hapmap];0.88[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8052408	0.80[JPT][hapmap]
rs8058609	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8059378	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8059437	0.80[ASW][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8060770	0.84[ASN][1000 genomes]
rs8062041	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs8062895	0.93[YRI][hapmap]
rs8182213	0.81[ASN][1000 genomes]
rs9924964	0.84[JPT][hapmap];1.00[YRI][hapmap]
rs9925763	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9926156	0.96[CEU][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9926927	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927526	0.81[CHB][hapmap];0.93[YRI][hapmap]
rs9928157	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9930890	0.89[ASN][1000 genomes]
rs9932062	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9932951	0.86[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap]
rs9938382	0.81[ASN][1000 genomes]
rs9941087	0.80[CEU][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9941346	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv833273	chr16:71971805-72152854	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
7	nsv534588	chr16:72078262-72287230	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
9	esv1808086	chr16:72088669-72128767	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
10	esv3343168	chr16:72111500-72128436	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	n/a

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs3764314	HSF4	cis	cerebellum	SCAN
rs3764314	HP	cis	parietal	SCAN
rs3764314	HPR	cis	parietal	SCAN
rs3764314	HPR	cis	cerebellum	SCAN
rs3764314	DHX38	cis	lymphoblastoid	seeQTL
rs3764314	DHX38	cis	multi-tissue	Pritchard
rs3764314	ZFHX3	cis	cerebellum	SCAN
rs3764314	NRN1L	cis	parietal	SCAN
rs3764314	DHODH	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72125800-72128800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:72126200-72128400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:72126200-72128400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr16:72126200-72128600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr16:72126200-72128600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:72126200-72128800	Active TSS	Ovary	ovary
7	chr16:72126200-72128800	Active TSS	Right Atrium	heart
8	chr16:72126200-72128800	Active TSS	NHLF	lung
9	chr16:72126200-72129000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:72126200-72129000	Active TSS	Right Ventricle	heart
11	chr16:72126200-72129000	Active TSS	HSMM	muscle
12	chr16:72126200-72129400	Active TSS	Psoas Muscle	Psoas
13	chr16:72126400-72127200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr16:72126400-72127200	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr16:72126400-72127200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr16:72126400-72127200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr16:72126400-72127200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:72126400-72127200	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr16:72126400-72127200	Flanking Active TSS	Thymus	Thymus
20	chr16:72126400-72127400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr16:72126400-72128000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr16:72126400-72128600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr16:72126400-72128600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr16:72126400-72128600	Active TSS	Gastric	stomach
25	chr16:72126400-72128800	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr16:72126400-72128800	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr16:72126400-72128800	Active TSS	Aorta	Aorta
28	chr16:72126400-72128800	Active TSS	Left Ventricle	heart
29	chr16:72126400-72128800	Active TSS	Lung	lung
30	chr16:72126400-72128800	Active TSS	NHDF-Ad	bronchial
31	chr16:72126400-72129000	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr16:72126400-72129000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:72126400-72129000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr16:72126600-72127200	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr16:72126600-72127200	Flanking Active TSS	Primary B cells from peripheral blood	blood
36	chr16:72126600-72127200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr16:72126600-72128200	Active TSS	Fetal Brain Female	brain
38	chr16:72126600-72128200	Active TSS	Pancreas	Pancrea
39	chr16:72126600-72128400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr16:72126600-72128400	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr16:72126600-72128400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr16:72126600-72128600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr16:72126600-72128600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr16:72126600-72128600	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr16:72126600-72128600	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr16:72126600-72128600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:72126600-72128600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr16:72126600-72128600	Active TSS	Fetal Intestine Large	intestine
49	chr16:72126600-72128600	Active TSS	Fetal Intestine Small	intestine
50	chr16:72126600-72128600	Active TSS	HSMMtube	muscle

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