Variant report

Variant	rs3765803
Chromosome Location	chr1:241695944-241695945
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:241693526..241696085-chr1:241801417..241805051,3	MCF-7	breast:
2	chr1:241692902..241697485-chr1:242010276..242014432,6	K562	blood:
3	chr1:241693547..241697485-chr1:242010276..242012986,4	K562	blood:

Variant related genes	Relation type
ENSG00000054277	Chromatin interaction
ENSG00000174371	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16841808	0.88[ASN][1000 genomes]
rs2275162	0.83[ASN][1000 genomes]
rs56957678	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58766151	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60673334	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61543265	0.83[AMR][1000 genomes]
rs61737760	0.83[ASN][1000 genomes]
rs66497254	0.83[AMR][1000 genomes]
rs66626588	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66669018	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6678986	0.88[ASN][1000 genomes]
rs6679186	0.88[ASN][1000 genomes]
rs66799800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6690411	0.88[ASN][1000 genomes]
rs67439618	0.83[AMR][1000 genomes]
rs67528386	0.83[ASN][1000 genomes]
rs67794990	0.83[ASN][1000 genomes]
rs68119865	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72766004	0.88[ASN][1000 genomes]
rs73135296	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918034	chr1:241072791-242005532	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv997966	chr1:241100739-242087629	Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv949442	chr1:241432051-241730054	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1002214	chr1:241458939-242099790	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv549460	chr1:241494578-241833287	Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1009579	chr1:241499537-241824631	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv530112	chr1:241522031-241840269	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv873368	chr1:241533392-242195928	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv873371	chr1:241667244-241747838	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv873372	chr1:241690554-242438293	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:241694400-241696600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:241694600-241696000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:241694600-241696200	Active TSS	Liver	Liver
4	chr1:241694600-241696200	Active TSS	GM12878-XiMat	blood
5	chr1:241694600-241696400	Active TSS	Brain Substantia Nigra	brain
6	chr1:241694600-241697000	Active TSS	Duodenum Mucosa	Duodenum
7	chr1:241694600-241697200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr1:241694800-241696200	Active TSS	Primary monocytes fromperipheralblood	blood
9	chr1:241694800-241696400	Active TSS	Adipose Nuclei	Adipose
10	chr1:241694800-241696400	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr1:241694800-241696600	Active TSS	Primary B cells from peripheral blood	blood
12	chr1:241694800-241697000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:241694800-241697400	Active TSS	Fetal Kidney	kidney
14	chr1:241694800-241697600	Active TSS	Placenta	Placenta
15	chr1:241695400-241696400	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr1:241695600-241696200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:241695600-241700000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:241695800-241696000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:241695800-241696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:241695800-241696000	Active TSS	Primary B cells from cord blood	blood
21	chr1:241695800-241696000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:241695800-241696000	Active TSS	Monocytes-CD14+_RO01746	blood
23	chr1:241695800-241696200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:241695800-241696400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:241695800-241696400	Enhancers	HepG2	liver
26	chr1:241695800-241696600	Weak transcription	A549	lung
27	chr1:241695800-241696800	Weak transcription	K562	blood
28	chr1:241695800-241697000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:241695800-241697000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:241695800-241697000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:241695800-241697000	Weak transcription	NHEK	skin
32	chr1:241695800-241697400	Enhancers	HMEC	breast
33	chr1:241695800-241698800	Weak transcription	Psoas Muscle	Psoas
34	chr1:241695800-241699000	Weak transcription	Fetal Lung	lung

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