Variant report

Variant	rs3770906
Chromosome Location	chr2:36644022-36644023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36587314..36589813-chr2:36643724..36646171,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17018667	0.81[AMR][1000 genomes]
rs17018686	0.85[AMR][1000 genomes]
rs17018786	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs3755206	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:36635800-36647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36636000-36647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:36636000-36647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:36636800-36647600	Weak transcription	Lung	lung
7	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
8	chr2:36638000-36644400	Strong transcription	NHEK	skin
9	chr2:36638000-36647800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:36638200-36647600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:36638400-36646400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:36639000-36644600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:36639400-36647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:36639600-36646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:36639600-36647600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:36639600-36647800	Weak transcription	Spleen	Spleen
17	chr2:36640000-36656000	Genic enhancers	A549	lung
18	chr2:36640200-36644600	Enhancers	Fetal Lung	lung
19	chr2:36640200-36645400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:36640200-36653400	Genic enhancers	HUVEC	blood vessel
21	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:36640400-36645800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:36640400-36646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:36640400-36647000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr2:36640400-36647200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:36640800-36644600	Enhancers	Adipose Nuclei	Adipose
27	chr2:36640800-36646400	Strong transcription	HSMM	muscle
28	chr2:36640800-36647400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:36640800-36651200	Weak transcription	HSMMtube	muscle
30	chr2:36641000-36644400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:36641000-36645400	Strong transcription	Hela-S3	cervix
32	chr2:36641000-36650000	Weak transcription	NH-A	brain
33	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:36641400-36644400	Enhancers	Colon Smooth Muscle	Colon
35	chr2:36641400-36647400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr2:36641400-36647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr2:36641400-36650400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:36641600-36651600	Enhancers	Fetal Heart	heart
39	chr2:36641800-36644400	Enhancers	Ovary	ovary
40	chr2:36641800-36645200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:36642000-36644400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:36642200-36646000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr2:36642600-36646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:36642800-36644200	Enhancers	Fetal Brain Female	brain
45	chr2:36643000-36644200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:36643000-36644400	Enhancers	Fetal Muscle Leg	muscle
47	chr2:36643000-36645000	Weak transcription	Right Ventricle	heart
48	chr2:36643000-36646200	Enhancers	Stomach Smooth Muscle	stomach
49	chr2:36643000-36646600	Weak transcription	Small Intestine	intestine
50	chr2:36643200-36645200	Weak transcription	Psoas Muscle	Psoas

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