Variant report

Variant	rs3755206
Chromosome Location	chr2:36683428-36683429
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36677912..36680893-chr2:36680931..36685254,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17018667	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs17018672	1.00[CEU][hapmap]
rs17018686	0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17018786	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17018960	1.00[CEU][hapmap]
rs17019010	1.00[CEU][hapmap]
rs17038833	1.00[CEU][hapmap]
rs3755212	1.00[CEU][hapmap]
rs3770906	0.85[AMR][1000 genomes]
rs3770916	1.00[CEU][hapmap]
rs3770923	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Height	25429064	GWAS catalog

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
2	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:36666400-36686800	Weak transcription	Gastric	stomach
4	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
6	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
7	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
8	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
9	chr2:36672400-36683600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:36676600-36685200	Enhancers	Fetal Heart	heart
14	chr2:36677600-36684800	Genic enhancers	HSMMtube	muscle
15	chr2:36678000-36688000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:36678400-36688000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:36678800-36685600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:36679000-36684400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:36679000-36686200	Strong transcription	NHEK	skin
20	chr2:36679000-36687600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:36679200-36688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:36679400-36683600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:36679800-36687200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
25	chr2:36680400-36683600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr2:36681000-36686600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr2:36681200-36683600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:36681200-36683600	Enhancers	Ovary	ovary
30	chr2:36681200-36684000	Genic enhancers	Aorta	Aorta
31	chr2:36681200-36684200	Enhancers	Left Ventricle	heart
32	chr2:36681200-36684200	Enhancers	Psoas Muscle	Psoas
33	chr2:36681400-36684000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr2:36681400-36684600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:36681600-36685400	Weak transcription	Hela-S3	cervix
36	chr2:36681800-36683600	Enhancers	Fetal Muscle Leg	muscle
37	chr2:36682000-36683800	Enhancers	Liver	Liver
38	chr2:36682000-36684000	Enhancers	Lung	lung
39	chr2:36682000-36684800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:36682000-36684800	Genic enhancers	Placenta	Placenta
41	chr2:36682000-36684800	Enhancers	Fetal Stomach	stomach
42	chr2:36682200-36683800	Enhancers	Right Atrium	heart
43	chr2:36682200-36684200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:36682200-36684600	Genic enhancers	HMEC	breast
45	chr2:36682200-36684800	Enhancers	Right Ventricle	heart
46	chr2:36682200-36685000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr2:36682200-36686200	Enhancers	Spleen	Spleen
48	chr2:36682400-36684000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:36682400-36687000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:36682400-36688800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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