Variant report

Variant	rs3770916
Chromosome Location	chr2:36633437-36633438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1179502	0.82[CHB][hapmap]
rs17018672	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17018708	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17018736	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17018786	1.00[CEU][hapmap]
rs17018822	1.00[CHB][hapmap]
rs17018960	1.00[CEU][hapmap]
rs17019010	1.00[CEU][hapmap]
rs17038831	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17038833	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030644	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3755206	1.00[CEU][hapmap]
rs3755211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755213	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755217	1.00[CHB][hapmap]
rs3770877	1.00[CHB][hapmap]
rs3770878	0.83[ASN][1000 genomes]
rs3770894	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3770915	0.97[ASN][1000 genomes]
rs3770921	1.00[ASN][1000 genomes]
rs3770923	1.00[CEU][hapmap]
rs3770924	0.83[ASN][1000 genomes]
rs3770931	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3821159	0.85[ASN][1000 genomes]
rs4141687	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs58077794	1.00[EUR][1000 genomes]
rs6755048	0.81[ASN][1000 genomes]
rs711254	1.00[CHB][hapmap]
rs848511	0.82[CHB][hapmap]
rs848512	1.00[CHB][hapmap]
rs860232	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
6	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
7	chr2:36620200-36635000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:36621000-36635000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:36621000-36635200	Weak transcription	Lung	lung
10	chr2:36621200-36634800	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:36621200-36634800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:36621200-36635000	Weak transcription	Fetal Stomach	stomach
13	chr2:36624200-36635000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:36624600-36634600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
16	chr2:36625200-36635000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:36625600-36635600	Weak transcription	Fetal Intestine Large	intestine
18	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
19	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr2:36626600-36637800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr2:36627200-36634000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr2:36627800-36634600	Weak transcription	Fetal Heart	heart
24	chr2:36628600-36634200	Enhancers	NHDF-Ad	bronchial
25	chr2:36629400-36635400	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:36630800-36635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:36631000-36634800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:36631000-36638200	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:36631000-36639000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr2:36631000-36639600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr2:36631200-36635200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:36631400-36633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:36631400-36635000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:36631400-36637000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:36631400-36639000	Genic enhancers	Muscle Satellite Cultured Cells	--
37	chr2:36631400-36639000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:36631600-36634000	Weak transcription	Fetal Brain Male	brain
39	chr2:36631600-36635000	Weak transcription	HSMMtube	muscle
40	chr2:36631600-36635400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr2:36631600-36637800	Weak transcription	Small Intestine	intestine
42	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:36631800-36633800	Weak transcription	Fetal Kidney	kidney
44	chr2:36631800-36633800	Strong transcription	HSMM	muscle
45	chr2:36631800-36634400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:36631800-36637000	Genic enhancers	HUVEC	blood vessel
47	chr2:36631800-36639600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr2:36632000-36633600	Enhancers	GM12878-XiMat	blood
49	chr2:36632000-36634600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr2:36632000-36640200	Weak transcription	Fetal Brain Female	brain

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