Variant report

Variant	rs1179502
Chromosome Location	chr2:36672661-36672662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36671394..36673015-chr2:36674870..36676719,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17018736	1.00[CHB][hapmap]
rs17018822	1.00[CHB][hapmap]
rs17038831	0.82[CHB][hapmap]
rs17038833	0.82[CHB][hapmap]
rs2030644	1.00[CHB][hapmap]
rs2689711	0.85[CEU][hapmap]
rs3755212	1.00[CHB][hapmap]
rs3755217	1.00[CHB][hapmap]
rs3770877	0.85[CHB][hapmap]
rs3770878	0.81[ASN][1000 genomes]
rs3770894	0.85[CHB][hapmap]
rs3770913	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs3770916	0.82[CHB][hapmap]
rs3770924	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4141687	0.85[CHB][hapmap]
rs6755048	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs711254	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs711255	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs848508	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs848511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs848512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs848513	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs848514	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs860232	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
10	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
11	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
13	chr2:36666400-36686800	Weak transcription	Gastric	stomach
14	chr2:36666600-36675600	Strong transcription	NHEK	skin
15	chr2:36666600-36683400	Genic enhancers	NHLF	lung
16	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
18	chr2:36668200-36676400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:36668200-36677200	Strong transcription	Hela-S3	cervix
20	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
21	chr2:36668400-36673000	Strong transcription	Placenta Amnion	Placenta Amnion
22	chr2:36668600-36677400	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr2:36668800-36673800	Weak transcription	Liver	Liver
24	chr2:36668800-36673800	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:36668800-36674600	Weak transcription	Right Atrium	heart
26	chr2:36668800-36676000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:36668800-36676600	Strong transcription	Placenta	Placenta
28	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:36669000-36673200	Strong transcription	Left Ventricle	heart
30	chr2:36669000-36673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:36669000-36676200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:36669200-36676200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:36669200-36676200	Strong transcription	HMEC	breast
34	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
35	chr2:36669400-36675600	Strong transcription	Adipose Nuclei	Adipose
36	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
37	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
38	chr2:36669800-36677000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:36669800-36679800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr2:36670000-36673800	Weak transcription	Fetal Intestine Small	intestine
41	chr2:36670000-36676400	Strong transcription	HSMMtube	muscle
42	chr2:36670000-36677600	Strong transcription	Primary B cells from cord blood	blood
43	chr2:36670000-36678800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:36670000-36682200	Genic enhancers	NHDF-Ad	bronchial
45	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
46	chr2:36670200-36672800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr2:36670200-36674600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr2:36670400-36676400	Weak transcription	Right Ventricle	heart
49	chr2:36670400-36682600	Weak transcription	Brain Substantia Nigra	brain
50	chr2:36670400-36683000	Weak transcription	Brain Inferior Temporal Lobe	brain

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