Variant report

Variant	rs3770913
Chromosome Location	chr2:36637557-36637558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36608117..36609788-chr2:36637029..36638848,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10186135	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10203010	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11124514	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11124515	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11124516	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1159133	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs1179502	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12465282	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs12465297	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs12477836	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12994926	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13394052	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13407488	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17018736	0.83[ASN][1000 genomes]
rs3755211	0.81[ASN][1000 genomes]
rs3755212	0.81[ASN][1000 genomes]
rs3755214	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770915	0.81[ASN][1000 genomes]
rs3770924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770932	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770936	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs4233914	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4670554	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6711707	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs6755048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7589917	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs848511	0.84[CHB][hapmap]
rs888075	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
4	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
5	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
6	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:36626600-36637800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:36631000-36638200	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:36631000-36639000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:36631000-36639600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:36631400-36639000	Genic enhancers	Muscle Satellite Cultured Cells	--
14	chr2:36631400-36639000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr2:36631600-36637800	Weak transcription	Small Intestine	intestine
16	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:36631800-36639600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:36632000-36640200	Weak transcription	Fetal Brain Female	brain
19	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:36632400-36639000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr2:36632400-36639600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:36632600-36638000	Weak transcription	Brain Substantia Nigra	brain
23	chr2:36633400-36638400	Enhancers	NH-A	brain
24	chr2:36633400-36639600	Enhancers	Adipose Nuclei	Adipose
25	chr2:36633400-36639800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr2:36633400-36640600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:36633600-36639200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr2:36633800-36639200	Enhancers	Fetal Lung	lung
29	chr2:36634000-36637600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr2:36634800-36638000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr2:36634800-36638800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr2:36635000-36638400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:36635000-36640600	Enhancers	NHDF-Ad	bronchial
34	chr2:36635200-36639600	Weak transcription	Brain Angular Gyrus	brain
35	chr2:36635200-36641000	Enhancers	Fetal Heart	heart
36	chr2:36635400-36637800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr2:36635400-36638000	Enhancers	Placenta Amnion	Placenta Amnion
38	chr2:36635400-36638200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:36635600-36638800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr2:36635600-36639200	Weak transcription	Gastric	stomach
41	chr2:36635600-36641800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:36635800-36637800	Weak transcription	Left Ventricle	heart
43	chr2:36635800-36638000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:36635800-36638000	Weak transcription	Brain Hippocampus Middle	brain
45	chr2:36635800-36638000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr2:36635800-36639000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:36635800-36639200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:36635800-36641600	Weak transcription	Right Atrium	heart
49	chr2:36635800-36641800	Weak transcription	Placenta	Placenta
50	chr2:36635800-36643000	Weak transcription	Fetal Muscle Leg	muscle

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