Variant report

Variant	rs7589917
Chromosome Location	chr2:36615654-36615655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36613783..36616310-chr2:36620739..36623500,2	MCF-7	breast:
2	chr2:36604191..36607049-chr2:36612212..36615757,3	K562	blood:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10178804	1.00[CHB][hapmap]
rs10186135	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10203010	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11124514	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11124515	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11124516	0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1159133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12465282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12465297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12477836	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12994926	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13394052	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13407488	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2113632	0.81[EUR][1000 genomes]
rs2161904	0.81[EUR][1000 genomes]
rs2689711	1.00[JPT][hapmap]
rs3755214	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3770913	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3770924	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3770932	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770936	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3770946	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs3770947	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3770963	0.81[EUR][1000 genomes]
rs4233914	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4670547	1.00[CHB][hapmap]
rs4670548	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4670554	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6711707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755048	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs711255	1.00[JPT][hapmap]
rs848508	1.00[JPT][hapmap]
rs848513	1.00[JPT][hapmap]
rs848514	1.00[JPT][hapmap]
rs888075	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs888076	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9308991	1.00[CHB][hapmap]
rs9308992	1.00[CHB][hapmap]
rs997602	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:36604400-36616400	Weak transcription	Gastric	stomach
4	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
5	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
10	chr2:36607800-36615800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:36608600-36616200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:36608600-36616200	Weak transcription	Fetal Stomach	stomach
13	chr2:36609000-36615800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:36609400-36620000	Weak transcription	Lung	lung
16	chr2:36610400-36617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:36611600-36616800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:36611600-36619800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
20	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:36612000-36616600	Enhancers	NHLF	lung
22	chr2:36612600-36615800	Enhancers	NHDF-Ad	bronchial
23	chr2:36613000-36615800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:36613000-36615800	Weak transcription	Right Atrium	heart
25	chr2:36613000-36617000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr2:36613000-36624000	Weak transcription	Small Intestine	intestine
27	chr2:36613200-36616400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:36613400-36616400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:36613600-36617000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr2:36613600-36617200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr2:36613800-36617000	Genic enhancers	HepG2	liver
32	chr2:36614000-36616400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:36614000-36617400	Transcr. at gene 5' and 3'	A549	lung
34	chr2:36614000-36617600	Enhancers	Fetal Heart	heart
35	chr2:36614000-36617600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr2:36614000-36617600	Genic enhancers	HSMM	muscle
37	chr2:36614000-36617800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr2:36614200-36616200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr2:36614200-36616200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:36614200-36616200	Genic enhancers	Osteobl	bone
41	chr2:36614200-36616400	Enhancers	NH-A	brain
42	chr2:36614200-36616800	Enhancers	Adipose Nuclei	Adipose
43	chr2:36614400-36616200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr2:36614400-36616200	Enhancers	Rectal Smooth Muscle	rectum
45	chr2:36614400-36616800	Weak transcription	Spleen	Spleen
46	chr2:36614600-36616000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:36614600-36616200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:36614800-36615800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:36614800-36615800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:36614800-36616400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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