Variant report

Variant	rs888076
Chromosome Location	chr2:36610782-36610783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10186135	1.00[JPT][hapmap]
rs10203010	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[EUR][1000 genomes]
rs11124514	0.81[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11124515	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs11124516	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs1159133	0.88[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12465282	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12465297	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12477836	0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs13394052	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs13407488	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2113631	0.86[EUR][1000 genomes]
rs2113632	0.88[EUR][1000 genomes]
rs2161904	0.88[EUR][1000 genomes]
rs2689711	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2888338	0.87[EUR][1000 genomes]
rs3755214	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs3770932	1.00[JPT][hapmap]
rs3770936	0.80[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3770946	0.96[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3770947	0.96[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770955	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs3770963	0.88[EUR][1000 genomes]
rs4233914	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4670548	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4670554	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs6708545	0.80[EUR][1000 genomes]
rs6711707	0.88[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs711255	1.00[JPT][hapmap]
rs7589917	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs848506	0.87[ASN][1000 genomes]
rs848508	1.00[JPT][hapmap]
rs848513	1.00[JPT][hapmap]
rs848514	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
3	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
4	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
5	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:36604400-36611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
8	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:36604400-36616400	Weak transcription	Gastric	stomach
12	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
13	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:36607000-36611600	Genic enhancers	NHLF	lung
20	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
21	chr2:36607800-36615800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr2:36608000-36610800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:36608000-36614000	Weak transcription	Hela-S3	cervix
24	chr2:36608000-36614600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:36608200-36612200	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:36608400-36611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr2:36608600-36611200	Weak transcription	Esophagus	oesophagus
28	chr2:36608600-36611600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:36608600-36612600	Weak transcription	Right Atrium	heart
30	chr2:36608600-36612600	Weak transcription	Small Intestine	intestine
31	chr2:36608600-36614000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:36608600-36614000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr2:36608600-36616200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr2:36608600-36616200	Weak transcription	Fetal Stomach	stomach
35	chr2:36608800-36611000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr2:36608800-36611200	Weak transcription	NHEK	skin
37	chr2:36608800-36611400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:36608800-36613000	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr2:36608800-36613400	Strong transcription	NH-A	brain
40	chr2:36608800-36613600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr2:36608800-36614200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:36608800-36615600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr2:36608800-36615600	Weak transcription	Fetal Kidney	kidney
44	chr2:36608800-36615600	Weak transcription	Fetal Lung	lung
45	chr2:36609000-36611800	Genic enhancers	HepG2	liver
46	chr2:36609000-36613000	Strong transcription	HSMM	muscle
47	chr2:36609000-36614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:36609000-36614000	Genic enhancers	A549	lung
49	chr2:36609000-36615800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr2:36609200-36611400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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