Variant report

Variant	rs11124516
Chromosome Location	chr2:36630743-36630744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36624404..36627384-chr2:36629683..36631735,2	MCF-7	breast:
2	chr2:36622875..36625167-chr2:36629133..36630867,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10186135	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10203010	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11124514	0.96[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11124515	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1159133	0.89[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12465282	0.88[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12465297	0.88[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12477836	0.96[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994926	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13394052	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13407488	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2689711	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3755214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770913	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770924	0.96[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770932	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3770936	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3770946	0.82[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs3770947	0.82[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4233914	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4670548	0.80[AFR][1000 genomes]
rs4670554	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6711707	0.89[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6755048	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs711255	1.00[JPT][hapmap]
rs7589917	0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs848508	1.00[JPT][hapmap]
rs848513	1.00[JPT][hapmap]
rs848514	1.00[JPT][hapmap]
rs888075	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs888076	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
4	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:36616800-36631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:36617200-36630800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:36617200-36631200	Weak transcription	Fetal Kidney	kidney
10	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
11	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
12	chr2:36620200-36635000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:36621000-36631400	Weak transcription	Fetal Brain Female	brain
14	chr2:36621000-36635000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:36621000-36635200	Weak transcription	Lung	lung
16	chr2:36621200-36630800	Weak transcription	Spleen	Spleen
17	chr2:36621200-36634800	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:36621200-36634800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:36621200-36635000	Weak transcription	Fetal Stomach	stomach
20	chr2:36622800-36631400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:36623000-36632200	Weak transcription	Right Atrium	heart
22	chr2:36623600-36630800	Genic enhancers	NHLF	lung
23	chr2:36624000-36631400	Enhancers	Psoas Muscle	Psoas
24	chr2:36624200-36635000	Weak transcription	Brain Angular Gyrus	brain
25	chr2:36624400-36630800	Weak transcription	Small Intestine	intestine
26	chr2:36624600-36630800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:36624600-36634600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
29	chr2:36625200-36635000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr2:36625400-36630800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:36625600-36635600	Weak transcription	Fetal Intestine Large	intestine
32	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
33	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr2:36626400-36631000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr2:36626400-36632400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr2:36626600-36630800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:36626600-36631200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:36626600-36632400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr2:36626600-36637800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr2:36626800-36630800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:36627200-36631000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr2:36627200-36634000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:36627400-36631000	Weak transcription	Primary B cells from cord blood	blood
45	chr2:36627800-36634600	Weak transcription	Fetal Heart	heart
46	chr2:36628000-36632200	Weak transcription	Brain Germinal Matrix	brain
47	chr2:36628600-36634200	Enhancers	NHDF-Ad	bronchial
48	chr2:36628800-36631200	Enhancers	Hela-S3	cervix
49	chr2:36629000-36631000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr2:36629000-36632800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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