Variant report

Variant	rs4141687
Chromosome Location	chr2:36677892-36677893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1179502	0.85[CHB][hapmap]
rs17018708	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17018736	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17018822	1.00[CHB][hapmap]
rs17038831	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17038833	0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2030644	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2058694	0.93[ASN][1000 genomes]
rs3755212	1.00[CHB][hapmap]
rs3755213	0.81[ASN][1000 genomes]
rs3755217	1.00[CHB][hapmap]
rs3770877	1.00[CHB][hapmap]
rs3770878	0.97[ASN][1000 genomes]
rs3770894	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs3770915	0.83[ASN][1000 genomes]
rs3770916	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770921	0.81[ASN][1000 genomes]
rs3770924	0.82[CHB][hapmap]
rs3821159	0.90[ASN][1000 genomes]
rs711254	1.00[CHB][hapmap]
rs848511	0.85[CHB][hapmap]
rs848512	1.00[CHB][hapmap]
rs860232	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
3	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
8	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
9	chr2:36666400-36686800	Weak transcription	Gastric	stomach
10	chr2:36666600-36683400	Genic enhancers	NHLF	lung
11	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
12	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
14	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
15	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
16	chr2:36669800-36679800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr2:36670000-36678800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:36670000-36682200	Genic enhancers	NHDF-Ad	bronchial
19	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
20	chr2:36670400-36682600	Weak transcription	Brain Substantia Nigra	brain
21	chr2:36670400-36683000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:36670800-36679000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr2:36670800-36682000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:36670800-36682800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr2:36671000-36678200	Weak transcription	Fetal Brain Female	brain
26	chr2:36671200-36682600	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:36672200-36680000	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:36672400-36683600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr2:36672600-36678600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr2:36672800-36678400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr2:36672800-36679600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:36672800-36682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:36672800-36683400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:36674000-36682000	Weak transcription	Liver	Liver
37	chr2:36674000-36682600	Weak transcription	Brain Angular Gyrus	brain
38	chr2:36674000-36682600	Weak transcription	Fetal Kidney	kidney
39	chr2:36674600-36678000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:36674600-36678400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:36674600-36679000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:36675000-36678200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:36675200-36678800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:36675400-36679600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr2:36675400-36683400	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr2:36675600-36679000	Genic enhancers	NHEK	skin
48	chr2:36675600-36679600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr2:36675600-36680000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr2:36676000-36683000	Genic enhancers	HSMM	muscle

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