Variant report

Variant	rs3821159
Chromosome Location	chr2:36659339-36659340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36659185..36660941-chr2:36665845..36668463,2	MCF-7	breast:
2	chr2:36605517..36607622-chr2:36658577..36660490,2	MCF-7	breast:
3	chr2:36653170..36656260-chr2:36656340..36659341,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17018736	0.85[ASN][1000 genomes]
rs17038833	0.85[ASN][1000 genomes]
rs2030644	0.90[ASN][1000 genomes]
rs2058694	0.88[ASN][1000 genomes]
rs2287083	0.83[AMR][1000 genomes]
rs3755211	0.83[ASN][1000 genomes]
rs3755212	0.83[ASN][1000 genomes]
rs3755213	0.85[ASN][1000 genomes]
rs3770878	0.92[ASN][1000 genomes]
rs3770894	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3770915	0.87[ASN][1000 genomes]
rs3770916	0.85[ASN][1000 genomes]
rs3770921	0.85[ASN][1000 genomes]
rs3770931	0.83[ASN][1000 genomes]
rs3770952	0.83[AMR][1000 genomes]
rs4141687	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
3	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:36644400-36665600	Weak transcription	Gastric	stomach
5	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
6	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
8	chr2:36648200-36660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:36648200-36660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:36648600-36659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:36650600-36659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
14	chr2:36651600-36659600	Weak transcription	Fetal Intestine Large	intestine
15	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
16	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:36651800-36660200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
20	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
21	chr2:36652400-36660200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:36652400-36660200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:36654600-36660200	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr2:36654800-36660800	Enhancers	Ovary	ovary
27	chr2:36655200-36660400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:36655400-36659600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr2:36655400-36659800	Weak transcription	NH-A	brain
30	chr2:36655400-36662600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr2:36655800-36659400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:36656800-36659600	Weak transcription	HMEC	breast
33	chr2:36656800-36660200	Enhancers	Adipose Nuclei	Adipose
34	chr2:36656800-36660200	Weak transcription	HSMMtube	muscle
35	chr2:36656800-36661000	Enhancers	Fetal Stomach	stomach
36	chr2:36657000-36659800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:36657000-36660400	Weak transcription	Hela-S3	cervix
38	chr2:36657000-36665600	Genic enhancers	A549	lung
39	chr2:36657200-36660000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:36657200-36660200	Enhancers	Rectal Smooth Muscle	rectum
41	chr2:36657200-36660400	Enhancers	Colon Smooth Muscle	Colon
42	chr2:36657400-36659600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:36657600-36659600	Weak transcription	Fetal Heart	heart
44	chr2:36657600-36661200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr2:36657600-36661600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr2:36657800-36659800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:36657800-36660000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr2:36657800-36660200	Weak transcription	Liver	Liver
49	chr2:36658000-36659600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr2:36658000-36659600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links