Variant report

Variant	rs3770952
Chromosome Location	chr2:36599197-36599198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36581462..36584625-chr2:36596620..36599809,5	MCF-7	breast:
2	chr2:36598192..36600031-chr2:36601938..36604063,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260025	Chromatin interaction
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17018822	1.00[MEX][hapmap]
rs2287083	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3755217	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs3770894	1.00[AMR][1000 genomes]
rs3821159	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36603600	Weak transcription	Brain Germinal Matrix	brain
2	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:36592400-36599800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:36592400-36605800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:36593400-36599400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:36593400-36601800	Enhancers	Fetal Lung	lung
7	chr2:36593600-36602400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:36594000-36603600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:36594200-36601600	Weak transcription	Fetal Brain Male	brain
10	chr2:36594200-36605400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:36594400-36602000	Enhancers	Fetal Heart	heart
12	chr2:36595200-36606000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:36595400-36599800	Weak transcription	Gastric	stomach
14	chr2:36595400-36600200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:36595400-36603600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:36595600-36600600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:36595600-36604200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:36595600-36604400	Enhancers	Colon Smooth Muscle	Colon
19	chr2:36596400-36599200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:36596400-36599400	Enhancers	Brain Anterior Caudate	brain
21	chr2:36596400-36599800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:36596400-36600600	Enhancers	Rectal Smooth Muscle	rectum
23	chr2:36596600-36600600	Weak transcription	Fetal Brain Female	brain
24	chr2:36596600-36603200	Enhancers	HepG2	liver
25	chr2:36597000-36603400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:36597200-36600200	Weak transcription	Spleen	Spleen
27	chr2:36597200-36600600	Flanking Active TSS	A549	lung
28	chr2:36597400-36600800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr2:36597400-36601200	Enhancers	Fetal Intestine Small	intestine
30	chr2:36597600-36599400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr2:36597600-36599800	Flanking Active TSS	HUVEC	blood vessel
32	chr2:36597800-36599200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:36597800-36599200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr2:36597800-36599400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:36597800-36599400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:36597800-36599400	Enhancers	Brain Angular Gyrus	brain
37	chr2:36598000-36599200	Flanking Active TSS	HSMMtube	muscle
38	chr2:36598000-36599400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:36598000-36599400	Flanking Active TSS	Osteobl	bone
40	chr2:36598000-36600000	Flanking Active TSS	NHEK	skin
41	chr2:36598000-36600400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:36598000-36600600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:36598000-36600800	Enhancers	Fetal Intestine Large	intestine
44	chr2:36598000-36601000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:36598000-36601000	Enhancers	Duodenum Mucosa	Duodenum
46	chr2:36598000-36601000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr2:36598000-36601000	Enhancers	Ovary	ovary
48	chr2:36598000-36601000	Enhancers	Right Ventricle	heart
49	chr2:36598000-36602000	Enhancers	Small Intestine	intestine
50	chr2:36598200-36599200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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