Variant report

Variant	rs3755217
Chromosome Location	chr2:36612204-36612205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1179502	1.00[CHB][hapmap]
rs17018708	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes]
rs17018736	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17018822	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs17038831	1.00[CHB][hapmap]
rs17038833	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2030644	1.00[CHB][hapmap]
rs3755211	0.81[ASN][1000 genomes]
rs3755212	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3770877	1.00[CHB][hapmap]
rs3770894	1.00[CHB][hapmap]
rs3770915	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3770916	1.00[CHB][hapmap]
rs3770921	1.00[AMR][1000 genomes]
rs3770924	0.82[CHB][hapmap]
rs3770952	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs4141687	1.00[CHB][hapmap]
rs711254	1.00[CHB][hapmap]
rs848511	1.00[CHB][hapmap]
rs848512	1.00[CHB][hapmap]
rs860232	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
3	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
4	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
6	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:36604400-36616400	Weak transcription	Gastric	stomach
10	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
11	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
18	chr2:36607800-36615800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr2:36608000-36614000	Weak transcription	Hela-S3	cervix
20	chr2:36608000-36614600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:36608600-36612600	Weak transcription	Right Atrium	heart
22	chr2:36608600-36612600	Weak transcription	Small Intestine	intestine
23	chr2:36608600-36614000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr2:36608600-36614000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:36608600-36616200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:36608600-36616200	Weak transcription	Fetal Stomach	stomach
27	chr2:36608800-36613000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr2:36608800-36613400	Strong transcription	NH-A	brain
29	chr2:36608800-36613600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:36608800-36614200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:36608800-36615600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:36608800-36615600	Weak transcription	Fetal Kidney	kidney
33	chr2:36608800-36615600	Weak transcription	Fetal Lung	lung
34	chr2:36609000-36613000	Strong transcription	HSMM	muscle
35	chr2:36609000-36614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:36609000-36614000	Genic enhancers	A549	lung
37	chr2:36609000-36615800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr2:36609200-36612600	Weak transcription	Fetal Heart	heart
39	chr2:36609200-36612800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:36609200-36614000	Weak transcription	Spleen	Spleen
41	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr2:36609400-36615600	Weak transcription	Fetal Intestine Small	intestine
43	chr2:36609400-36620000	Weak transcription	Lung	lung
44	chr2:36609600-36614000	Weak transcription	HMEC	breast
45	chr2:36609600-36614200	Weak transcription	Adipose Nuclei	Adipose
46	chr2:36609800-36614600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:36609800-36615600	Weak transcription	Ovary	ovary
48	chr2:36610000-36612600	Weak transcription	Right Ventricle	heart
49	chr2:36610000-36613800	Weak transcription	Aorta	Aorta
50	chr2:36610200-36612600	Weak transcription	Placenta	Placenta

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