Variant report

Variant	rs17018822
Chromosome Location	chr2:36680888-36680889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36673825..36676793-chr2:36678926..36681242,2	MCF-7	breast:
2	chr2:36677912..36680893-chr2:36680931..36685254,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1179502	1.00[CHB][hapmap]
rs17018708	1.00[CHB][hapmap]
rs17018736	1.00[CHB][hapmap]
rs17038831	1.00[CHB][hapmap]
rs17038833	0.82[CHB][hapmap]
rs2030644	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2058694	0.85[CHD][hapmap]
rs3755212	1.00[CHB][hapmap]
rs3755217	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs3770877	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3770878	1.00[AMR][1000 genomes]
rs3770894	1.00[CHB][hapmap]
rs3770909	0.87[ASN][1000 genomes]
rs3770916	1.00[CHB][hapmap]
rs3770924	0.82[CHB][hapmap]
rs3770952	1.00[MEX][hapmap]
rs4141687	1.00[CHB][hapmap]
rs711254	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs848511	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs848512	1.00[CHB][hapmap]
rs860232	1.00[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
2	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
6	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
7	chr2:36666400-36686800	Weak transcription	Gastric	stomach
8	chr2:36666600-36683400	Genic enhancers	NHLF	lung
9	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
11	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
12	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
13	chr2:36670000-36682200	Genic enhancers	NHDF-Ad	bronchial
14	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
15	chr2:36670400-36682600	Weak transcription	Brain Substantia Nigra	brain
16	chr2:36670400-36683000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:36670800-36682000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:36670800-36682800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:36671200-36682600	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:36672400-36683600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr2:36672800-36682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:36672800-36683400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:36674000-36682000	Weak transcription	Liver	Liver
26	chr2:36674000-36682600	Weak transcription	Brain Angular Gyrus	brain
27	chr2:36674000-36682600	Weak transcription	Fetal Kidney	kidney
28	chr2:36675400-36683400	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr2:36676000-36683000	Genic enhancers	HSMM	muscle
31	chr2:36676200-36682600	Genic enhancers	HepG2	liver
32	chr2:36676600-36682200	Weak transcription	Spleen	Spleen
33	chr2:36676600-36682600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:36676600-36683000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:36676600-36683000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:36676600-36683400	Enhancers	Adipose Nuclei	Adipose
37	chr2:36676600-36685200	Enhancers	Fetal Heart	heart
38	chr2:36676800-36682600	Weak transcription	Pancreas	Pancrea
39	chr2:36676800-36683000	Weak transcription	Esophagus	oesophagus
40	chr2:36677400-36681400	Weak transcription	Lung	lung
41	chr2:36677400-36682400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:36677600-36681000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr2:36677600-36681200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:36677600-36681200	Weak transcription	Primary B cells from cord blood	blood
45	chr2:36677600-36681200	Weak transcription	Left Ventricle	heart
46	chr2:36677600-36682600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr2:36677600-36684800	Genic enhancers	HSMMtube	muscle
48	chr2:36677800-36683400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr2:36678000-36681200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr2:36678000-36681400	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links