Variant report

Variant	rs3770877
Chromosome Location	chr2:36679004-36679005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36673825..36676793-chr2:36678926..36681242,2	MCF-7	breast:
2	chr2:36677912..36680893-chr2:36680931..36685254,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1179502	0.85[CHB][hapmap]
rs17018708	0.82[CHB][hapmap]
rs17018736	1.00[CHB][hapmap]
rs17018822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17038831	1.00[CHB][hapmap]
rs17038833	0.82[CHB][hapmap]
rs2030644	1.00[CHB][hapmap]
rs3755212	1.00[CHB][hapmap]
rs3755217	1.00[CHB][hapmap]
rs3770878	1.00[AMR][1000 genomes]
rs3770894	1.00[CHB][hapmap]
rs3770909	0.85[ASN][1000 genomes]
rs3770916	1.00[CHB][hapmap]
rs3770924	0.82[CHB][hapmap]
rs4141687	1.00[CHB][hapmap]
rs56063975	0.88[AFR][1000 genomes]
rs56309608	1.00[AFR][1000 genomes]
rs711254	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs73924826	0.83[AFR][1000 genomes]
rs73924835	0.88[AFR][1000 genomes]
rs848511	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs848512	1.00[CHB][hapmap]
rs860232	1.00[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
3	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
7	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
8	chr2:36666400-36686800	Weak transcription	Gastric	stomach
9	chr2:36666600-36683400	Genic enhancers	NHLF	lung
10	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
12	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
13	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
14	chr2:36669800-36679800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr2:36670000-36682200	Genic enhancers	NHDF-Ad	bronchial
16	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
17	chr2:36670400-36682600	Weak transcription	Brain Substantia Nigra	brain
18	chr2:36670400-36683000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:36670800-36682000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:36670800-36682800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:36671200-36682600	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:36672200-36680000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr2:36672400-36683600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr2:36672800-36679600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:36672800-36682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:36672800-36683400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:36674000-36682000	Weak transcription	Liver	Liver
30	chr2:36674000-36682600	Weak transcription	Brain Angular Gyrus	brain
31	chr2:36674000-36682600	Weak transcription	Fetal Kidney	kidney
32	chr2:36675400-36679600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:36675400-36683400	Genic enhancers	Muscle Satellite Cultured Cells	--
34	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:36675600-36679600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr2:36675600-36680000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:36676000-36683000	Genic enhancers	HSMM	muscle
38	chr2:36676200-36679200	Enhancers	Psoas Muscle	Psoas
39	chr2:36676200-36679800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:36676200-36682600	Genic enhancers	HepG2	liver
41	chr2:36676400-36679200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr2:36676400-36680200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr2:36676600-36682200	Weak transcription	Spleen	Spleen
44	chr2:36676600-36682600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:36676600-36683000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr2:36676600-36683000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr2:36676600-36683400	Enhancers	Adipose Nuclei	Adipose
48	chr2:36676600-36685200	Enhancers	Fetal Heart	heart
49	chr2:36676800-36682600	Weak transcription	Pancreas	Pancrea
50	chr2:36676800-36683000	Weak transcription	Esophagus	oesophagus

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