Variant report

Variant	rs73924835
Chromosome Location	chr2:36669276-36669277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3770877	0.88[AFR][1000 genomes]
rs55817057	0.88[AFR][1000 genomes]
rs56063975	1.00[AFR][1000 genomes]
rs56309608	0.88[AFR][1000 genomes]
rs73924826	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
9	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:36660800-36669600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
14	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:36661000-36669800	Weak transcription	Fetal Brain Male	brain
17	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
19	chr2:36665200-36672000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:36666200-36670600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
22	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
24	chr2:36666400-36686800	Weak transcription	Gastric	stomach
25	chr2:36666600-36669800	Weak transcription	Brain Anterior Caudate	brain
26	chr2:36666600-36675600	Strong transcription	NHEK	skin
27	chr2:36666600-36683400	Genic enhancers	NHLF	lung
28	chr2:36666800-36669600	Weak transcription	Right Ventricle	heart
29	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:36667200-36671800	Strong transcription	NH-A	brain
31	chr2:36667600-36669400	Enhancers	Colon Smooth Muscle	Colon
32	chr2:36667800-36669800	Weak transcription	Psoas Muscle	Psoas
33	chr2:36667800-36670000	Enhancers	Primary hematopoietic stem cells	blood
34	chr2:36667800-36672400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:36667800-36672600	Strong transcription	HepG2	liver
36	chr2:36668000-36669400	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr2:36668000-36672000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr2:36668000-36672600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
40	chr2:36668200-36669400	Genic enhancers	Adipose Nuclei	Adipose
41	chr2:36668200-36669800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr2:36668200-36669800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:36668200-36670800	Genic enhancers	HSMM	muscle
44	chr2:36668200-36671600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr2:36668200-36672200	Strong transcription	Fetal Intestine Large	intestine
46	chr2:36668200-36676400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:36668200-36677200	Strong transcription	Hela-S3	cervix
48	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
49	chr2:36668400-36669400	Enhancers	Fetal Lung	lung
50	chr2:36668400-36669400	Genic enhancers	Sigmoid Colon	Sigmoid Colon

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