Variant report

Variant	rs55817057
Chromosome Location	chr2:36646403-36646404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36646028..36647836-chr2:36650769..36652474,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56063975	0.88[AFR][1000 genomes]
rs73924826	0.83[AFR][1000 genomes]
rs73924835	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:36635800-36647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:36636000-36647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:36636000-36647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:36636800-36647600	Weak transcription	Lung	lung
6	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
7	chr2:36638000-36647800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:36638200-36647600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:36639400-36647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:36639600-36646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:36639600-36647600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:36639600-36647800	Weak transcription	Spleen	Spleen
13	chr2:36640000-36656000	Genic enhancers	A549	lung
14	chr2:36640200-36653400	Genic enhancers	HUVEC	blood vessel
15	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:36640400-36646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:36640400-36647000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:36640400-36647200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:36640800-36647400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:36640800-36651200	Weak transcription	HSMMtube	muscle
21	chr2:36641000-36650000	Weak transcription	NH-A	brain
22	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:36641400-36647400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr2:36641400-36647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr2:36641400-36650400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:36641600-36651600	Enhancers	Fetal Heart	heart
27	chr2:36642600-36646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:36643000-36646600	Weak transcription	Small Intestine	intestine
29	chr2:36644000-36648200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:36644200-36647200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:36644200-36647600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr2:36644200-36648400	Weak transcription	Brain Germinal Matrix	brain
33	chr2:36644200-36651400	Weak transcription	Colonic Mucosa	Colon
34	chr2:36644200-36651600	Weak transcription	HMEC	breast
35	chr2:36644200-36657200	Weak transcription	Brain Anterior Caudate	brain
36	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
37	chr2:36644400-36646600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:36644400-36646600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:36644400-36647600	Weak transcription	Brain Angular Gyrus	brain
40	chr2:36644400-36647600	Weak transcription	Fetal Muscle Leg	muscle
41	chr2:36644400-36647600	Weak transcription	Ovary	ovary
42	chr2:36644400-36647600	Weak transcription	Pancreas	Pancrea
43	chr2:36644400-36647600	Weak transcription	Right Atrium	heart
44	chr2:36644400-36647800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:36644400-36649600	Weak transcription	Fetal Kidney	kidney
46	chr2:36644400-36650600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr2:36644400-36651400	Weak transcription	NHEK	skin
48	chr2:36644400-36653000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:36644400-36656800	Weak transcription	Fetal Stomach	stomach
50	chr2:36644400-36657200	Weak transcription	Colon Smooth Muscle	Colon

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