Variant report

Variant	rs56063975
Chromosome Location	chr2:36651441-36651442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36646028..36647836-chr2:36650769..36652474,2	MCF-7	breast:
2	chr2:36646546..36648812-chr2:36651208..36653826,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3770877	0.88[AFR][1000 genomes]
rs55817057	0.88[AFR][1000 genomes]
rs56309608	0.88[AFR][1000 genomes]
rs73924826	0.94[AFR][1000 genomes]
rs73924835	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
2	chr2:36640000-36656000	Genic enhancers	A549	lung
3	chr2:36640200-36653400	Genic enhancers	HUVEC	blood vessel
4	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:36641600-36651600	Enhancers	Fetal Heart	heart
7	chr2:36644200-36651600	Weak transcription	HMEC	breast
8	chr2:36644200-36657200	Weak transcription	Brain Anterior Caudate	brain
9	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
10	chr2:36644400-36653000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:36644400-36656800	Weak transcription	Fetal Stomach	stomach
12	chr2:36644400-36657200	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:36644400-36665600	Weak transcription	Gastric	stomach
15	chr2:36644600-36653000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:36644600-36656600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:36645200-36651600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:36645400-36652200	Weak transcription	Hela-S3	cervix
19	chr2:36646200-36654600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:36647200-36654600	Weak transcription	Small Intestine	intestine
21	chr2:36648000-36654400	Strong transcription	HSMM	muscle
22	chr2:36648000-36656800	Weak transcription	Right Atrium	heart
23	chr2:36648000-36657000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
25	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
27	chr2:36648200-36654400	Weak transcription	Spleen	Spleen
28	chr2:36648200-36654600	Weak transcription	Lung	lung
29	chr2:36648200-36654800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:36648200-36656000	Weak transcription	Aorta	Aorta
31	chr2:36648200-36660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:36648200-36660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:36648400-36651600	Weak transcription	Adipose Nuclei	Adipose
34	chr2:36648400-36657200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:36648600-36657200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:36648600-36659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:36649000-36651600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:36649000-36652200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr2:36649000-36654400	Weak transcription	Ovary	ovary
40	chr2:36649000-36657600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:36649200-36651800	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr2:36649400-36654600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr2:36649800-36651600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:36649800-36653400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:36650000-36651800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr2:36650000-36653200	Strong transcription	NH-A	brain
48	chr2:36650000-36653600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr2:36650000-36657400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:36650400-36653400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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