Variant report

Variant	rs56309608
Chromosome Location	chr2:36672196-36672197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36671394..36673015-chr2:36674870..36676719,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3770877	1.00[AFR][1000 genomes]
rs56063975	0.88[AFR][1000 genomes]
rs73924826	0.83[AFR][1000 genomes]
rs73924835	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
10	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
11	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
13	chr2:36666400-36686800	Weak transcription	Gastric	stomach
14	chr2:36666600-36675600	Strong transcription	NHEK	skin
15	chr2:36666600-36683400	Genic enhancers	NHLF	lung
16	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:36667800-36672400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:36667800-36672600	Strong transcription	HepG2	liver
19	chr2:36668000-36672600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
21	chr2:36668200-36672200	Strong transcription	Fetal Intestine Large	intestine
22	chr2:36668200-36676400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:36668200-36677200	Strong transcription	Hela-S3	cervix
24	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
25	chr2:36668400-36672600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr2:36668400-36673000	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr2:36668600-36672600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:36668600-36677400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr2:36668800-36672400	Weak transcription	Spleen	Spleen
30	chr2:36668800-36672600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:36668800-36673800	Weak transcription	Liver	Liver
32	chr2:36668800-36673800	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr2:36668800-36674600	Weak transcription	Right Atrium	heart
34	chr2:36668800-36676000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:36668800-36676600	Strong transcription	Placenta	Placenta
36	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr2:36669000-36672400	Genic enhancers	A549	lung
38	chr2:36669000-36673200	Strong transcription	Left Ventricle	heart
39	chr2:36669000-36673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:36669000-36676200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:36669200-36672600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr2:36669200-36676200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:36669200-36676200	Strong transcription	HMEC	breast
44	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
45	chr2:36669400-36672400	Strong transcription	Lung	lung
46	chr2:36669400-36672600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:36669400-36675600	Strong transcription	Adipose Nuclei	Adipose
48	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
49	chr2:36669600-36672200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr2:36669600-36672600	Strong transcription	H1 Cell Line	embryonic stem cell

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