Variant report

Variant	rs17018786
Chromosome Location	chr2:36662533-36662534
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36581891..36584945-chr2:36659676..36663580,4	MCF-7	breast:
2	chr2:36655361..36657186-chr2:36662322..36664635,2	K562	blood:

Variant related genes	Relation type
ENSG00000260025	Chromatin interaction
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17018667	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs17018672	1.00[CEU][hapmap]
rs17018686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs17018960	1.00[CEU][hapmap]
rs17019010	1.00[CEU][hapmap]
rs17038833	1.00[CEU][hapmap]
rs3755206	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3755212	1.00[CEU][hapmap]
rs3770906	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs3770916	1.00[CEU][hapmap]
rs3770923	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36644400-36665600	Weak transcription	Gastric	stomach
3	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
4	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
5	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
8	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:36655400-36662600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:36657000-36665600	Genic enhancers	A549	lung
13	chr2:36658000-36668400	Weak transcription	Esophagus	oesophagus
14	chr2:36658400-36665400	Enhancers	NHDF-Ad	bronchial
15	chr2:36660400-36662600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:36660600-36666200	Weak transcription	Pancreas	Pancrea
18	chr2:36660600-36668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:36660600-36668200	Weak transcription	Fetal Intestine Large	intestine
20	chr2:36660600-36668400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:36660600-36668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr2:36660600-36668600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
26	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:36660800-36663400	Enhancers	NHLF	lung
29	chr2:36660800-36663600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:36660800-36664800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:36660800-36665600	Weak transcription	Placenta	Placenta
32	chr2:36660800-36665600	Weak transcription	Ovary	ovary
33	chr2:36660800-36665600	Weak transcription	Right Ventricle	heart
34	chr2:36660800-36666000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr2:36660800-36666200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:36660800-36666200	Weak transcription	Lung	lung
37	chr2:36660800-36668000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr2:36660800-36668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:36660800-36668400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:36660800-36668400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr2:36660800-36668400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr2:36660800-36668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:36660800-36668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:36660800-36668600	Weak transcription	Spleen	Spleen
45	chr2:36660800-36669600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
48	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr2:36661000-36665600	Enhancers	Muscle Satellite Cultured Cells	--

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