Variant report

Variant	rs3776564
Chromosome Location	chr5:36630263-36630264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36629975..36633425-chr5:36634181..36637706,4	K562	blood:
2	chr5:36624162..36627070-chr5:36629917..36632290,2	MCF-7	breast:
3	chr5:36629890..36632594-chr5:36651302..36653813,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12054904	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16903193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3822468	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs745428	1.00[CHB][hapmap]
rs745429	1.00[CHB][hapmap]
rs9790917	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36608800-36639600	Weak transcription	Esophagus	oesophagus
2	chr5:36611000-36633600	Weak transcription	Brain Germinal Matrix	brain
3	chr5:36616800-36651200	Weak transcription	Psoas Muscle	Psoas
4	chr5:36620600-36633600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:36620800-36638000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:36621600-36634600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:36624200-36630600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:36624600-36637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:36627400-36633800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:36628000-36630600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:36628600-36630400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:36628600-36641000	Weak transcription	Fetal Brain Male	brain
13	chr5:36628800-36633200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:36629000-36632000	Enhancers	HMEC	breast
15	chr5:36629200-36634000	Strong transcription	Hela-S3	cervix
16	chr5:36629400-36637800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:36629600-36630600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:36629600-36631200	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:36629600-36631400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:36629600-36631400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:36629600-36631600	Genic enhancers	Brain Hippocampus Middle	brain
22	chr5:36629600-36631600	Weak transcription	Fetal Brain Female	brain
23	chr5:36629600-36631600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr5:36629600-36633600	Genic enhancers	Brain Anterior Caudate	brain
25	chr5:36629600-36633600	Strong transcription	Fetal Muscle Leg	muscle
26	chr5:36629800-36630400	Enhancers	Fetal Heart	heart
27	chr5:36629800-36630600	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr5:36629800-36630800	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr5:36629800-36630800	Strong transcription	Adipose Nuclei	Adipose
30	chr5:36629800-36630800	Strong transcription	NHDF-Ad	bronchial
31	chr5:36629800-36631000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:36629800-36631000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr5:36629800-36631000	Genic enhancers	Brain Cingulate Gyrus	brain
34	chr5:36629800-36631000	Genic enhancers	Brain Substantia Nigra	brain
35	chr5:36629800-36631000	Genic enhancers	Placenta	Placenta
36	chr5:36629800-36631000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr5:36629800-36631000	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:36629800-36631200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:36629800-36631200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:36629800-36631600	Genic enhancers	NHEK	skin
41	chr5:36629800-36632000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:36629800-36632000	Weak transcription	Brain Angular Gyrus	brain
43	chr5:36629800-36633200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr5:36629800-36633600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
45	chr5:36630000-36630400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:36630000-36630400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:36630000-36630400	Strong transcription	Fetal Intestine Large	intestine
48	chr5:36630000-36630400	Genic enhancers	Left Ventricle	heart
49	chr5:36630000-36630600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr5:36630000-36630800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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