Variant report

Variant	rs9790917
Chromosome Location	chr5:36629914-36629915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36629890..36632594-chr5:36651302..36653813,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12054904	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16903193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3776564	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822468	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36608800-36639600	Weak transcription	Esophagus	oesophagus
2	chr5:36611000-36633600	Weak transcription	Brain Germinal Matrix	brain
3	chr5:36611200-36630000	Weak transcription	Right Ventricle	heart
4	chr5:36615400-36630000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:36615400-36630200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:36616800-36651200	Weak transcription	Psoas Muscle	Psoas
7	chr5:36619600-36630000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:36620600-36630000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:36620600-36633600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:36620800-36638000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:36621600-36634600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:36624200-36630600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:36624400-36630000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr5:36624600-36630000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:36624600-36637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:36624800-36630000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:36624800-36630000	Weak transcription	Left Ventricle	heart
18	chr5:36625200-36630200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:36627400-36633800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:36628000-36630000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:36628000-36630600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:36628200-36630000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:36628400-36630000	Weak transcription	Fetal Intestine Large	intestine
24	chr5:36628600-36630400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:36628600-36641000	Weak transcription	Fetal Brain Male	brain
26	chr5:36628800-36633200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:36629000-36632000	Enhancers	HMEC	breast
28	chr5:36629200-36634000	Strong transcription	Hela-S3	cervix
29	chr5:36629400-36630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:36629400-36637800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:36629600-36630000	Strong transcription	HSMM	muscle
32	chr5:36629600-36630200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:36629600-36630600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:36629600-36631200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:36629600-36631400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr5:36629600-36631400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:36629600-36631600	Genic enhancers	Brain Hippocampus Middle	brain
38	chr5:36629600-36631600	Weak transcription	Fetal Brain Female	brain
39	chr5:36629600-36631600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr5:36629600-36633600	Genic enhancers	Brain Anterior Caudate	brain
41	chr5:36629600-36633600	Strong transcription	Fetal Muscle Leg	muscle
42	chr5:36629800-36630000	Enhancers	Osteobl	bone
43	chr5:36629800-36630200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:36629800-36630400	Enhancers	Fetal Heart	heart
45	chr5:36629800-36630600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr5:36629800-36630800	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr5:36629800-36630800	Strong transcription	Adipose Nuclei	Adipose
48	chr5:36629800-36630800	Strong transcription	NHDF-Ad	bronchial
49	chr5:36629800-36631000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr5:36629800-36631000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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