Variant report

Variant	rs3777748
Chromosome Location	chr6:35107682-35107683
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2005	0.83[JPT][hapmap]
rs2140420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2494096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2689097	0.96[ASN][1000 genomes]
rs2762341	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2762342	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2762350	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2820229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920194	0.84[ASN][1000 genomes]
rs707968	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772251	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35104000-35108600	Weak transcription	Ovary	ovary
2	chr6:35104200-35108000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:35104200-35108000	Weak transcription	Fetal Lung	lung
4	chr6:35104400-35114000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:35105000-35108800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35106000-35108000	Weak transcription	Adipose Nuclei	Adipose
7	chr6:35106000-35110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:35106000-35113600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:35106200-35108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:35106200-35113400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:35106600-35107800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:35107000-35108000	Enhancers	HepG2	liver
13	chr6:35107000-35108200	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:35107200-35108000	Enhancers	Brain Hippocampus Middle	brain
15	chr6:35107200-35108200	Enhancers	Fetal Intestine Large	intestine
16	chr6:35107200-35108200	Enhancers	Fetal Intestine Small	intestine
17	chr6:35107200-35108400	Enhancers	Fetal Stomach	stomach
18	chr6:35107200-35108800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:35107400-35108200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:35107400-35108200	Enhancers	Liver	Liver
21	chr6:35107400-35109600	Enhancers	Stomach Mucosa	stomach
22	chr6:35107400-35110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:35107600-35108200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:35107600-35108600	Weak transcription	Colonic Mucosa	Colon
25	chr6:35107600-35108600	Enhancers	Fetal Heart	heart

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