Variant report

Variant	rs2762342
Chromosome Location	chr6:35062347-35062348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35040084..35042469-chr6:35059564..35062383,2	MCF-7	breast:
2	chr6:35060379..35062413-chr6:35062564..35064850,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2140420	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395609	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2494096	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2689097	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2762341	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2820229	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6920194	0.81[ASN][1000 genomes]
rs707967	0.83[EUR][1000 genomes]
rs707968	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772251	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820073	0.82[EUR][1000 genomes]
rs820074	0.81[EUR][1000 genomes]
rs820076	0.81[EUR][1000 genomes]
rs820078	0.83[EUR][1000 genomes]
rs820079	0.83[EUR][1000 genomes]
rs820080	0.83[EUR][1000 genomes]
rs820081	0.83[EUR][1000 genomes]
rs820084	0.82[EUR][1000 genomes]
rs820086	0.80[EUR][1000 genomes]
rs820087	0.82[EUR][1000 genomes]
rs820089	0.82[EUR][1000 genomes]
rs820091	0.81[EUR][1000 genomes]
rs820092	0.82[EUR][1000 genomes]
rs820094	0.82[EUR][1000 genomes]
rs820096	0.82[EUR][1000 genomes]
rs820097	0.82[EUR][1000 genomes]
rs9348964	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35050000-35063800	Weak transcription	HUVEC	blood vessel
2	chr6:35051800-35064000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:35053400-35064200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:35054000-35063800	Weak transcription	Stomach Mucosa	stomach
5	chr6:35055000-35064000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:35055800-35064000	Weak transcription	NHEK	skin
7	chr6:35056600-35064000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:35056600-35064000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:35056600-35064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:35056800-35063400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:35057000-35063400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:35057000-35063800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:35057200-35062600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:35057200-35062800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:35057200-35062800	Enhancers	NHDF-Ad	bronchial
16	chr6:35057600-35063800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:35057800-35063400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:35058000-35063600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:35058000-35064200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:35058200-35064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:35058800-35062400	Enhancers	Osteobl	bone
22	chr6:35058800-35063800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:35058800-35064000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:35059000-35063400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:35059400-35062400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:35059400-35063600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:35059400-35063800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:35059600-35063600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:35060400-35062600	Enhancers	HSMMtube	muscle
30	chr6:35060400-35064000	Weak transcription	Psoas Muscle	Psoas
31	chr6:35060600-35063000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:35060600-35063800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:35060600-35064000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:35060600-35064200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:35060600-35064600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:35060800-35063400	Weak transcription	Brain Substantia Nigra	brain
37	chr6:35060800-35063600	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:35060800-35065000	Weak transcription	Left Ventricle	heart
39	chr6:35061000-35063600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:35061000-35063600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:35061000-35063600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:35061000-35063600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:35061000-35063800	Weak transcription	Fetal Heart	heart
44	chr6:35061000-35063800	Weak transcription	Ovary	ovary
45	chr6:35061000-35063800	Weak transcription	HMEC	breast
46	chr6:35061000-35063800	Weak transcription	HSMM	muscle
47	chr6:35061000-35064200	Weak transcription	Fetal Lung	lung
48	chr6:35061200-35063600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:35061400-35062800	Enhancers	Placenta	Placenta
50	chr6:35061600-35062400	Enhancers	HepG2	liver

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