Variant report

Variant	rs820086
Chromosome Location	chr6:35027814-35027815
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35021741..35024244-chr6:35027456..35030264,2	K562	blood:
2	chr6:35027650..35029628-chr6:35048238..35049961,2	K562	blood:
3	chr6:35020474..35024244-chr6:35026178..35030264,6	K562	blood:
4	chr6:35027752..35029526-chr6:35031427..35033441,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1093985	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13191889	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs1568705	0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2140420	0.81[CEU][hapmap]
rs2762342	0.80[EUR][1000 genomes]
rs2762350	0.81[CEU][hapmap]
rs2820224	0.83[ASN][1000 genomes]
rs2820229	0.81[CEU][hapmap]
rs2820230	0.88[ASN][1000 genomes]
rs3800426	0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6937805	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs707967	0.84[CEU][hapmap];0.91[CHB][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72537461	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820068	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820073	0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820074	0.84[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820075	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820076	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820078	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820079	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820080	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820081	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820084	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820087	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820088	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820091	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs820092	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820093	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs820094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820096	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820097	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs820098	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs865353	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357193	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34994600-35036000	Weak transcription	K562	blood
2	chr6:35015800-35044200	Weak transcription	HMEC	breast
3	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
4	chr6:35016800-35028000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:35016800-35028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:35017400-35028000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:35017400-35028600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:35017600-35028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:35017600-35036200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
11	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
12	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:35018800-35029000	Weak transcription	NHDF-Ad	bronchial
14	chr6:35018800-35038200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
17	chr6:35020200-35037600	Strong transcription	Fetal Intestine Large	intestine
18	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:35020600-35034800	Strong transcription	Primary T cells from cord blood	blood
20	chr6:35021000-35037000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:35021000-35037600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:35021200-35028000	Weak transcription	NHLF	lung
23	chr6:35021200-35028600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:35021200-35034800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr6:35021400-35036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:35021400-35037400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:35021600-35028200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:35021600-35036800	Strong transcription	Colonic Mucosa	Colon
29	chr6:35021800-35028800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:35021800-35055400	Weak transcription	HSMM	muscle
31	chr6:35022000-35034800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr6:35022000-35036600	Strong transcription	Placenta	Placenta
33	chr6:35022400-35029000	Genic enhancers	Left Ventricle	heart
34	chr6:35022400-35036200	Strong transcription	Pancreas	Pancrea
35	chr6:35022600-35028800	Weak transcription	NH-A	brain
36	chr6:35022600-35028800	Weak transcription	Osteobl	bone
37	chr6:35022600-35037200	Strong transcription	Gastric	stomach
38	chr6:35022800-35028200	Genic enhancers	Right Ventricle	heart
39	chr6:35023000-35028000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:35023000-35029000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:35023000-35033200	Weak transcription	Aorta	Aorta
42	chr6:35023800-35028200	Genic enhancers	Spleen	Spleen
43	chr6:35024000-35028000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:35024000-35039200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:35024400-35028800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:35024400-35031200	Strong transcription	Esophagus	oesophagus
47	chr6:35024600-35034800	Strong transcription	Ovary	ovary
48	chr6:35024600-35035400	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:35024800-35062000	Weak transcription	A549	lung
50	chr6:35025000-35029200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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