Variant report

Variant	rs820098
Chromosome Location	chr6:35018461-35018462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35008594..35011463-chr6:35016010..35018720,2	MCF-7	breast:
2	chr6:35010474..35014059-chr6:35017313..35020799,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1093985	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13191889	0.87[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1568705	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16896390	0.81[JPT][hapmap]
rs16896553	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2049316	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2395609	0.85[CEU][hapmap]
rs2494096	0.85[CEU][hapmap]
rs2762341	0.81[EUR][1000 genomes]
rs2820224	0.90[ASN][1000 genomes]
rs2820230	0.96[ASN][1000 genomes]
rs3800424	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3800426	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3800430	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3800433	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3823437	0.83[ASN][1000 genomes]
rs6937805	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs707967	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs707968	0.81[EUR][1000 genomes]
rs72537461	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772251	0.84[CEU][hapmap]
rs820068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820073	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820074	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820075	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820077	0.82[YRI][hapmap]
rs820078	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820079	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820080	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820081	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820084	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820086	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820087	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820089	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820091	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs820092	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820094	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820096	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820097	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs865353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348964	0.84[CEU][hapmap]
rs9357193	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9469933	0.91[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34994600-35036000	Weak transcription	K562	blood
2	chr6:35009000-35018800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:35009800-35018800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:35010400-35018600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:35010400-35019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:35011400-35018600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:35011800-35019400	Enhancers	Dnd41	blood
8	chr6:35012000-35020000	Genic enhancers	Fetal Intestine Small	intestine
9	chr6:35012200-35019200	Enhancers	Fetal Lung	lung
10	chr6:35012200-35019200	Enhancers	Fetal Thymus	thymus
11	chr6:35013200-35018600	Weak transcription	HepG2	liver
12	chr6:35013800-35018800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:35014400-35019200	Enhancers	Placenta	Placenta
14	chr6:35014600-35019400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:35014600-35022200	Weak transcription	NHEK	skin
16	chr6:35014800-35021200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:35015000-35018600	Enhancers	Right Ventricle	heart
18	chr6:35015000-35018800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:35015000-35018800	Enhancers	Ovary	ovary
20	chr6:35015000-35019000	Enhancers	Aorta	Aorta
21	chr6:35015200-35018600	Enhancers	Colonic Mucosa	Colon
22	chr6:35015200-35018600	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr6:35015200-35018800	Enhancers	Right Atrium	heart
24	chr6:35015200-35021800	Enhancers	Left Ventricle	heart
25	chr6:35015600-35019200	Genic enhancers	Fetal Intestine Large	intestine
26	chr6:35015600-35021800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:35015800-35018800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:35015800-35018800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:35015800-35021200	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:35015800-35021200	Weak transcription	Liver	Liver
31	chr6:35015800-35044200	Weak transcription	HMEC	breast
32	chr6:35016000-35019200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:35016000-35019400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:35016200-35019200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr6:35016200-35022400	Weak transcription	Pancreas	Pancrea
36	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
37	chr6:35016400-35019200	Enhancers	Fetal Brain Male	brain
38	chr6:35016400-35023800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr6:35016600-35019000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:35016600-35021200	Weak transcription	Primary B cells from cord blood	blood
41	chr6:35016600-35021600	Genic enhancers	Fetal Stomach	stomach
42	chr6:35016800-35018600	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr6:35016800-35018600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:35016800-35018600	Enhancers	NH-A	brain
45	chr6:35016800-35019400	Enhancers	Fetal Brain Female	brain
46	chr6:35016800-35020600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:35016800-35026400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:35016800-35026800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:35016800-35027800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:35016800-35028000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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