The 2.0 version of rSNPBase

Variant report

Variant rs2820230
Chromosome Location chr6:35012829-35012830
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:34939400-35016000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr6:34986200-35015000 Weak transcription Primary B cells from peripheral blood blood
3 chr6:34986800-35014800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr6:34987000-35015800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr6:34987400-35015800 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr6:34993800-35014600 Weak transcription Fetal Brain Male brain
7 chr6:34994200-35014400 Weak transcription NHLF lung
8 chr6:34994600-35036000 Weak transcription K562 blood
9 chr6:34995000-35013800 Weak transcription Hela-S3 cervix
10 chr6:34996000-35015200 Weak transcription Primary T cells fromperipheralblood blood
11 chr6:34999800-35014600 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr6:35003800-35014600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr6:35006000-35014200 Genic enhancers HSMMtube muscle
14 chr6:35006200-35014200 Weak transcription Osteobl bone
15 chr6:35007400-35014200 Enhancers Right Atrium heart
16 chr6:35008600-35014200 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr6:35009000-35014600 Enhancers Right Ventricle heart
18 chr6:35009000-35015000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr6:35009000-35018800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
20 chr6:35009200-35016200 Enhancers Primary neutrophils fromperipheralblood blood
21 chr6:35009400-35014600 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr6:35009400-35016800 Enhancers HUVEC blood vessel
23 chr6:35009600-35015200 Enhancers Primary hematopoietic stem cells blood
24 chr6:35009600-35016000 Enhancers ES-I3 Cell Line embryonic stem cell
25 chr6:35009600-35016000 Enhancers Primary monocytes fromperipheralblood blood
26 chr6:35009800-35015200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr6:35009800-35016000 Enhancers Brain Angular Gyrus brain
28 chr6:35009800-35018800 Enhancers HUES64 Cell Line embryonic stem cell
29 chr6:35010000-35014200 Enhancers H9 Cell Line embryonic stem cell
30 chr6:35010000-35016000 Enhancers iPS-20b Cell Line embryonic stem cell
31 chr6:35010000-35017200 Enhancers H1 Cell Line embryonic stem cell
32 chr6:35010000-35018200 Enhancers iPS-18 Cell Line embryonic stem cell
33 chr6:35010200-35014200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
34 chr6:35010200-35015600 Enhancers Brain Hippocampus Middle brain
35 chr6:35010200-35015800 Enhancers HUES6 Cell Line embryonic stem cell
36 chr6:35010200-35017600 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr6:35010200-35018000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
38 chr6:35010400-35013600 Enhancers Pancreas Pancrea
39 chr6:35010400-35014200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr6:35010400-35015200 Enhancers Duodenum Smooth Muscle Duodenum
41 chr6:35010400-35015600 Enhancers HUES48 Cell Line embryonic stem cell
42 chr6:35010400-35015800 Enhancers Monocytes-CD14+_RO01746 blood
43 chr6:35010400-35018600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr6:35010400-35019000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr6:35010600-35014400 Enhancers Spleen Spleen
46 chr6:35010600-35017200 Enhancers Sigmoid Colon Sigmoid Colon
47 chr6:35010800-35013000 Enhancers ES-WA7 Cell Line embryonic stem cell
48 chr6:35010800-35013200 Weak transcription Placenta Amnion Placenta Amnion
49 chr6:35010800-35014000 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr6:35010800-35014200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015