Variant report

Variant	rs13191889
Chromosome Location	chr6:35013209-35013210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:
2	chr6:35007638..35010426-chr6:35012141..35014563,2	K562	blood:
3	chr6:35010474..35014059-chr6:35017313..35020799,3	K562	blood:
4	chr6:35011986..35013703-chr6:35031904..35034159,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1093985	0.86[ASN][1000 genomes]
rs10947536	0.81[JPT][hapmap]
rs1568705	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2177381	0.81[JPT][hapmap]
rs2293242	0.81[JPT][hapmap]
rs2820224	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2820230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3800426	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3823438	0.85[CEU][hapmap]
rs6932857	0.82[JPT][hapmap]
rs6937805	0.83[ASN][1000 genomes]
rs72537461	0.86[ASN][1000 genomes]
rs820068	0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs820073	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs820074	0.82[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs820075	0.94[ASN][1000 genomes]
rs820076	0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs820078	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs820079	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs820080	0.87[ASN][1000 genomes]
rs820081	0.87[ASN][1000 genomes]
rs820084	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs820086	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs820087	0.87[ASN][1000 genomes]
rs820088	0.86[ASN][1000 genomes]
rs820089	0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs820091	0.85[ASN][1000 genomes]
rs820092	0.88[ASN][1000 genomes]
rs820093	0.82[ASN][1000 genomes]
rs820094	0.87[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs820096	0.90[ASN][1000 genomes]
rs820097	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs820098	0.87[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs847848	0.81[JPT][hapmap]
rs865353	0.87[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
7	chr6:34994200-35014400	Weak transcription	NHLF	lung
8	chr6:34994600-35036000	Weak transcription	K562	blood
9	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
10	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:35003800-35014600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:35006000-35014200	Genic enhancers	HSMMtube	muscle
14	chr6:35006200-35014200	Weak transcription	Osteobl	bone
15	chr6:35007400-35014200	Enhancers	Right Atrium	heart
16	chr6:35008600-35014200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35009000-35014600	Enhancers	Right Ventricle	heart
18	chr6:35009000-35015000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:35009000-35018800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:35009200-35016200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:35009400-35014600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:35009400-35016800	Enhancers	HUVEC	blood vessel
23	chr6:35009600-35015200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:35009600-35016000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:35009600-35016000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:35009800-35015200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:35009800-35016000	Enhancers	Brain Angular Gyrus	brain
28	chr6:35009800-35018800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:35010000-35014200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:35010000-35016000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr6:35010000-35017200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:35010000-35018200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:35010200-35014200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:35010200-35015600	Enhancers	Brain Hippocampus Middle	brain
35	chr6:35010200-35015800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:35010200-35017600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:35010200-35018000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:35010400-35013600	Enhancers	Pancreas	Pancrea
39	chr6:35010400-35014200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:35010400-35015200	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr6:35010400-35015600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:35010400-35015800	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr6:35010400-35018600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:35010400-35019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:35010600-35014400	Enhancers	Spleen	Spleen
46	chr6:35010600-35017200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr6:35010800-35014000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr6:35010800-35014200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:35010800-35015800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr6:35011000-35014200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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