Variant report

Variant	rs6932857
Chromosome Location	chr6:34944863-34944864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34944340..34947621-chr6:34949271..34952410,3	MCF-7	breast:
2	chr6:34940870..34943018-chr6:34943935..34946831,3	K562	blood:
3	chr6:34944718..34946235-chr6:34960421..34962888,2	K562	blood:
4	chr6:34940687..34943018-chr6:34944838..34946831,2	K562	blood:
5	chr6:34943502..34945906-chr6:34947769..34950337,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1051115	0.83[YRI][hapmap]
rs10807144	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10807145	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10947536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212217	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12661991	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13191009	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191889	0.82[JPT][hapmap]
rs13219624	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1555107	0.96[CHB][hapmap];0.87[JPT][hapmap]
rs16896390	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1737727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2140418	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2177381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273006	0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs2293242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473613	0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2504162	0.96[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2504168	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2985	0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs3734262	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3800451	0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4432973	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646933	0.82[YRI][hapmap]
rs6457797	0.82[YRI][hapmap]
rs6905468	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6907619	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6918872	0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6941065	0.81[YRI][hapmap]
rs7739385	0.83[YRI][hapmap]
rs7739991	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7757211	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7759369	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820078	0.82[JPT][hapmap]
rs820079	0.81[JPT][hapmap]
rs820084	0.81[JPT][hapmap]
rs820097	0.82[JPT][hapmap]
rs847847	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs847848	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes]
rs847850	0.85[CEU][hapmap]
rs9296139	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9357188	0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9368834	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs9368836	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9380469	0.82[CEU][hapmap]
rs9394252	0.82[AFR][1000 genomes]
rs9784818	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6932857	C6orf107	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:34920400-34958600	Weak transcription	Colonic Mucosa	Colon
3	chr6:34921200-34949400	Weak transcription	Esophagus	oesophagus
4	chr6:34921600-34949400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:34922000-34953800	Weak transcription	Hela-S3	cervix
6	chr6:34922800-34950200	Weak transcription	Brain Germinal Matrix	brain
7	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
9	chr6:34927200-34952200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:34928400-34949400	Weak transcription	Pancreas	Pancrea
11	chr6:34929400-34963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:34929800-34953800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:34931600-34954800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:34932400-34949200	Weak transcription	Right Atrium	heart
15	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:34932800-34962400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:34933000-34949400	Weak transcription	HSMM	muscle
18	chr6:34933000-34952600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:34935200-34947000	Weak transcription	Fetal Heart	heart
20	chr6:34935200-34950400	Weak transcription	Right Ventricle	heart
21	chr6:34935200-34954800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:34935200-34958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:34938000-34949200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:34938200-34949000	Weak transcription	K562	blood
25	chr6:34938400-34949200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:34938400-34949200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:34938400-34949400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:34938400-34949400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:34938400-34949400	Weak transcription	Dnd41	blood
30	chr6:34938400-34949600	Weak transcription	Brain Angular Gyrus	brain
31	chr6:34938400-34949600	Weak transcription	Fetal Lung	lung
32	chr6:34938400-34954800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:34938600-34949000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:34938600-34949600	Weak transcription	Fetal Brain Female	brain
35	chr6:34938600-34949600	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:34938800-34949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:34938800-34949200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:34938800-34949200	Weak transcription	Fetal Thymus	thymus
39	chr6:34938800-34949400	Weak transcription	Spleen	Spleen
40	chr6:34938800-34952800	Weak transcription	Aorta	Aorta
41	chr6:34939000-34947800	Weak transcription	Ovary	ovary
42	chr6:34939000-34949000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:34939000-34949200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:34939000-34949400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:34939000-34949400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:34939000-34949400	Weak transcription	Gastric	stomach
47	chr6:34939000-34949600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:34939000-34950400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:34939200-34949400	Weak transcription	Osteobl	bone
50	chr6:34939200-34950600	Weak transcription	Fetal Muscle Trunk	muscle

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