Variant report

Variant	rs820097
Chromosome Location	chr6:35019379-35019380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35010474..35014059-chr6:35017313..35020799,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1093985	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10947536	0.81[JPT][hapmap]
rs13191889	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1568705	0.86[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs2140420	0.81[CEU][hapmap]
rs2177381	0.81[JPT][hapmap]
rs2293242	0.81[JPT][hapmap]
rs2689097	0.80[EUR][1000 genomes]
rs2762342	0.82[EUR][1000 genomes]
rs2762350	0.81[CEU][hapmap]
rs2820224	0.95[ASN][1000 genomes]
rs2820229	0.81[CEU][hapmap]
rs2820230	0.90[ASN][1000 genomes]
rs3800426	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs6932857	0.82[JPT][hapmap]
rs6937805	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs707967	0.84[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72537461	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820068	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820073	0.84[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820074	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820075	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820076	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820080	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820081	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820086	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs820087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820088	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820089	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820091	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs820092	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820093	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820094	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs820098	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847848	0.81[JPT][hapmap]
rs865353	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34994600-35036000	Weak transcription	K562	blood
2	chr6:35011800-35019400	Enhancers	Dnd41	blood
3	chr6:35012000-35020000	Genic enhancers	Fetal Intestine Small	intestine
4	chr6:35014600-35019400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:35014600-35022200	Weak transcription	NHEK	skin
6	chr6:35014800-35021200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:35015200-35021800	Enhancers	Left Ventricle	heart
8	chr6:35015600-35021800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:35015800-35021200	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:35015800-35021200	Weak transcription	Liver	Liver
11	chr6:35015800-35044200	Weak transcription	HMEC	breast
12	chr6:35016000-35019400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:35016200-35022400	Weak transcription	Pancreas	Pancrea
14	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
15	chr6:35016400-35023800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:35016600-35021200	Weak transcription	Primary B cells from cord blood	blood
17	chr6:35016600-35021600	Genic enhancers	Fetal Stomach	stomach
18	chr6:35016800-35019400	Enhancers	Fetal Brain Female	brain
19	chr6:35016800-35020600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:35016800-35026400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:35016800-35026800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:35016800-35027800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:35016800-35028000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:35016800-35028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:35017000-35021200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:35017000-35021600	Enhancers	Brain Angular Gyrus	brain
27	chr6:35017000-35026000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr6:35017000-35026200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:35017000-35026200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:35017200-35020600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:35017200-35021600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:35017200-35021800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:35017200-35022000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:35017400-35020400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:35017400-35020600	Weak transcription	Primary T cells from cord blood	blood
36	chr6:35017400-35020600	Weak transcription	Psoas Muscle	Psoas
37	chr6:35017400-35021000	Weak transcription	Esophagus	oesophagus
38	chr6:35017400-35021600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr6:35017400-35021800	Enhancers	Brain Substantia Nigra	brain
40	chr6:35017400-35022600	Weak transcription	Gastric	stomach
41	chr6:35017400-35028000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:35017400-35028600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:35017600-35019400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:35017600-35021600	Genic enhancers	Fetal Muscle Leg	muscle
45	chr6:35017600-35021800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:35017600-35028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:35017600-35036200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:35017800-35019400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:35017800-35020000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:35017800-35021000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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