Variant report

Variant	rs820068
Chromosome Location	chr6:35040079-35040080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35039756..35041851-chr6:35046944..35049669,2	K562	blood:
2	chr6:35032635..35034931-chr6:35037985..35040100,2	MCF-7	breast:
3	chr6:35039746..35042584-chr6:35046507..35048012,2	MCF-7	breast:
4	chr6:35039881..35041859-chr6:35044532..35047324,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1093985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191889	0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1568705	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16896390	0.81[JPT][hapmap]
rs16896553	0.92[JPT][hapmap]
rs2049316	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2395609	0.85[CEU][hapmap]
rs2494096	0.85[CEU][hapmap]
rs2762341	0.81[EUR][1000 genomes]
rs2820224	0.88[ASN][1000 genomes]
rs2820230	0.93[ASN][1000 genomes]
rs3800424	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs3800426	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3800430	0.92[JPT][hapmap]
rs3800433	0.91[JPT][hapmap]
rs3823437	0.80[ASN][1000 genomes]
rs6937805	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs707967	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs707968	0.81[EUR][1000 genomes]
rs72537461	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772251	0.83[CEU][hapmap]
rs820073	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820074	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820075	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820077	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs820078	0.88[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820079	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820080	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820081	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820084	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820086	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820087	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820088	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820089	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820091	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs820092	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820094	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820096	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820097	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs820098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs865353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348964	0.83[CEU][hapmap]
rs9357193	0.90[JPT][hapmap]
rs9469933	0.91[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35015800-35044200	Weak transcription	HMEC	breast
2	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
3	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
4	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
5	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
8	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:35021800-35055400	Weak transcription	HSMM	muscle
10	chr6:35024800-35062000	Weak transcription	A549	lung
11	chr6:35025600-35056000	Strong transcription	Liver	Liver
12	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
14	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:35028800-35045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:35029000-35050800	Weak transcription	NHLF	lung
18	chr6:35029200-35045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:35029400-35045200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
23	chr6:35029800-35051200	Weak transcription	Osteobl	bone
24	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:35030600-35040600	Weak transcription	NHEK	skin
26	chr6:35030600-35045000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:35030600-35045000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:35031600-35045000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:35032200-35040200	Weak transcription	Fetal Brain Female	brain
30	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:35033000-35050200	Weak transcription	Dnd41	blood
32	chr6:35033200-35046000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
34	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:35034800-35045800	Weak transcription	Brain Angular Gyrus	brain
36	chr6:35035000-35040200	Weak transcription	Brain Anterior Caudate	brain
37	chr6:35035000-35045000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:35035200-35044800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:35035200-35045200	Weak transcription	Brain Germinal Matrix	brain
40	chr6:35035400-35042200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:35036000-35040800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:35036200-35040200	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:35036200-35040600	Weak transcription	Pancreas	Pancrea
44	chr6:35036200-35059200	Strong transcription	Primary T cells from cord blood	blood
45	chr6:35036400-35041400	Strong transcription	Ovary	ovary
46	chr6:35036600-35040400	Weak transcription	Right Atrium	heart
47	chr6:35036600-35042800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:35036600-35046400	Weak transcription	Fetal Lung	lung
49	chr6:35036800-35040200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:35036800-35040200	Weak transcription	Esophagus	oesophagus

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