Variant report

Variant	rs7772251
Chromosome Location	chr6:35107169-35107170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34131718..34132244-chr6:35107029..35108249,3	K562	blood:
2	chr6:35100917..35102494-chr6:35106098..35107816,2	MCF-7	breast:
3	chr6:34954226..34955209-chr6:35107125..35108338,9	K562	blood:

Variant related genes	Relation type
ENSG00000264241	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2005	0.87[JPT][hapmap]
rs2140420	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395609	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2494096	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2689097	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2762341	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2762342	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2762350	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs2820229	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777748	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs3800405	0.83[JPT][hapmap]
rs6457804	0.83[JPT][hapmap]
rs6920194	0.84[ASN][1000 genomes]
rs6939132	0.83[JPT][hapmap]
rs707967	0.81[CEU][hapmap]
rs707968	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820068	0.83[CEU][hapmap]
rs820082	0.83[MEX][hapmap]
rs820098	0.84[CEU][hapmap]
rs9348964	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394277	0.83[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7772251	ANKS1A	cis	parietal	SCAN
rs7772251	RPL10A	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35104000-35108600	Weak transcription	Ovary	ovary
2	chr6:35104200-35108000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:35104200-35108000	Weak transcription	Fetal Lung	lung
4	chr6:35104400-35114000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:35105000-35108800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35106000-35107200	Enhancers	Liver	Liver
7	chr6:35106000-35108000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:35106000-35110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:35106000-35113600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:35106200-35108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:35106200-35113400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:35106400-35107200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:35106600-35107800	Weak transcription	Brain Anterior Caudate	brain
14	chr6:35107000-35108000	Enhancers	HepG2	liver
15	chr6:35107000-35108200	Enhancers	Duodenum Mucosa	Duodenum

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