Variant report

Variant	rs6939132
Chromosome Location	chr6:35132049-35132050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35123069..35125917-chr6:35131448..35134859,3	K562	blood:
2	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
3	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
4	chr6:35119907..35121608-chr6:35130081..35132531,2	MCF-7	breast:
5	chr6:35115116..35116634-chr6:35129312..35132110,2	MCF-7	breast:
6	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:
7	chr6:35129806..35132792-chr6:35197170..35199424,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1408255	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2005	0.82[JPT][hapmap]
rs3800403	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800404	0.84[ASN][1000 genomes]
rs3800405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711405	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457801	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457802	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6457806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6911268	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6914081	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6920194	0.81[ASN][1000 genomes]
rs6925406	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6933979	0.92[YRI][hapmap]
rs7772251	0.83[JPT][hapmap]
rs9380494	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380495	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394287	0.82[CEU][hapmap]
rs942373	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs942374	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs942375	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35128600-35133200	Weak transcription	Esophagus	oesophagus
3	chr6:35128600-35133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:35129200-35133200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:35130000-35133600	Weak transcription	Fetal Stomach	stomach
8	chr6:35130200-35133400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:35130200-35136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:35130400-35132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:35130400-35133200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:35130400-35133200	Weak transcription	Fetal Kidney	kidney
13	chr6:35130400-35134000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:35130600-35132200	Weak transcription	Stomach Mucosa	stomach
15	chr6:35130600-35132800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35130600-35132800	Weak transcription	Osteobl	bone
17	chr6:35130600-35133000	Weak transcription	NHDF-Ad	bronchial
18	chr6:35130600-35133200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
20	chr6:35130800-35132600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:35130800-35132800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:35130800-35133400	Enhancers	HepG2	liver
23	chr6:35130800-35136200	Weak transcription	Left Ventricle	heart
24	chr6:35131000-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:35131000-35133200	Weak transcription	Aorta	Aorta
26	chr6:35131000-35133200	Weak transcription	Pancreas	Pancrea
27	chr6:35131000-35137400	Weak transcription	Lung	lung
28	chr6:35131200-35133800	Weak transcription	Gastric	stomach
29	chr6:35131800-35134800	Enhancers	Liver	Liver
30	chr6:35131800-35135000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr6:35132000-35132600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links