Variant report

Variant	rs942374
Chromosome Location	chr6:35143892-35143893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35143164..35145592-chr6:35146745..35149067,2	K562	blood:
2	chr6:35111770..35114566-chr6:35142353..35144098,2	MCF-7	breast:
3	chr6:35143164..35145749-chr6:35145997..35149678,4	K562	blood:
4	chr6:35126065..35127862-chr6:35143837..35146241,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12189669	0.89[EUR][1000 genomes]
rs1408255	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1888822	0.81[YRI][hapmap]
rs1888825	0.81[YRI][hapmap]
rs1987673	0.81[YRI][hapmap]
rs2005	0.82[JPT][hapmap]
rs2071920	0.81[YRI][hapmap]
rs2267657	0.81[YRI][hapmap]
rs3800385	0.81[YRI][hapmap]
rs3800403	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800404	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800405	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4711405	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711407	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4711411	0.81[YRI][hapmap]
rs6457801	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457802	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6457806	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6911268	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6914081	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6925406	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6931790	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6939132	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7772251	0.83[JPT][hapmap]
rs914547	0.81[YRI][hapmap]
rs9366881	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366882	0.87[YRI][hapmap]
rs9380494	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380495	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9394277	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9394287	0.93[CEU][hapmap]
rs942373	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs942375	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469972	0.81[YRI][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
2	chr6:35137000-35148800	Weak transcription	Right Atrium	heart
3	chr6:35137600-35145200	Weak transcription	Fetal Kidney	kidney
4	chr6:35139000-35146000	Weak transcription	NHLF	lung
5	chr6:35141400-35146000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:35141800-35145800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:35141800-35149200	Weak transcription	HUVEC	blood vessel
8	chr6:35142000-35144000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:35142000-35144000	Weak transcription	NHDF-Ad	bronchial
10	chr6:35142000-35145000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:35142000-35145000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:35142000-35145000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:35142000-35145200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:35142000-35145200	Weak transcription	HSMM	muscle
15	chr6:35142000-35145200	Weak transcription	NH-A	brain
16	chr6:35142000-35145600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:35142000-35146400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:35142000-35146400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:35142000-35146800	Weak transcription	Left Ventricle	heart
20	chr6:35142000-35149000	Weak transcription	A549	lung
21	chr6:35142000-35149200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:35142000-35149600	Weak transcription	Spleen	Spleen
23	chr6:35142200-35145400	Weak transcription	HSMMtube	muscle
24	chr6:35142200-35146400	Weak transcription	GM12878-XiMat	blood
25	chr6:35142200-35146800	Weak transcription	Fetal Heart	heart
26	chr6:35142400-35144200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:35142800-35146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:35143800-35144000	Weak transcription	Right Ventricle	heart
29	chr6:35143800-35144400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:35143800-35149200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:35143800-35149400	Enhancers	Osteobl	bone

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