Variant report

Variant	rs9366881
Chromosome Location	chr6:35150077-35150078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
2	chr6:35147873..35150223-chr6:35160298..35162374,2	MCF-7	breast:
3	chr6:35147410..35151273-chr6:35169982..35172318,3	MCF-7	breast:
4	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:
5	chr6:35149389..35151264-chr6:35177090..35178879,2	MCF-7	breast:
6	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12189669	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800403	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3800404	0.85[EUR][1000 genomes]
rs4711405	0.83[EUR][1000 genomes]
rs6457801	0.84[EUR][1000 genomes]
rs6457802	0.84[EUR][1000 genomes]
rs9380494	0.88[EUR][1000 genomes]
rs942373	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs942374	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs942375	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35144000-35150200	Enhancers	NHDF-Ad	bronchial
2	chr6:35145000-35150200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:35146800-35154400	Enhancers	Fetal Heart	heart
4	chr6:35147600-35150200	Enhancers	Stomach Smooth Muscle	stomach
5	chr6:35147600-35152400	Weak transcription	Lung	lung
6	chr6:35148000-35151200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:35148200-35151000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:35148200-35151000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:35148600-35150200	Enhancers	Adipose Nuclei	Adipose
10	chr6:35148800-35150200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:35148800-35150200	Enhancers	Esophagus	oesophagus
12	chr6:35148800-35150200	Enhancers	Right Atrium	heart
13	chr6:35148800-35150200	Enhancers	NH-A	brain
14	chr6:35148800-35150400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:35148800-35150400	Enhancers	HMEC	breast
16	chr6:35149000-35150200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:35149000-35150400	Enhancers	Placenta	Placenta
18	chr6:35149200-35150200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:35149200-35150200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:35149200-35150400	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr6:35149400-35150200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:35149400-35150200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:35149400-35150200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:35149400-35150200	Flanking Active TSS	A549	lung
25	chr6:35149400-35150400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:35149400-35150400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:35149400-35150400	Enhancers	Brain Hippocampus Middle	brain
28	chr6:35149400-35150400	Enhancers	Left Ventricle	heart
29	chr6:35149400-35150400	Enhancers	Right Ventricle	heart
30	chr6:35149400-35150400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:35149600-35150200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
32	chr6:35149600-35150200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:35149600-35150200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:35149600-35150200	Enhancers	Gastric	stomach
35	chr6:35149600-35150200	Enhancers	Stomach Mucosa	stomach
36	chr6:35149600-35150400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr6:35149600-35150400	Enhancers	Colonic Mucosa	Colon
38	chr6:35149600-35150400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr6:35149600-35150400	Enhancers	Pancreas	Pancrea
40	chr6:35149800-35150200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:35149800-35150200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr6:35149800-35150200	Flanking Active TSS	Fetal Intestine Large	intestine
43	chr6:35149800-35150200	Flanking Active TSS	Fetal Intestine Small	intestine
44	chr6:35149800-35150400	Active TSS	Hela-S3	cervix
45	chr6:35149800-35151000	Weak transcription	Osteobl	bone
46	chr6:35149800-35154200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:35149800-35154400	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:35149800-35158000	Weak transcription	Aorta	Aorta
49	chr6:35150000-35150200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:35150000-35150200	Enhancers	Duodenum Mucosa	Duodenum

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