Variant report

Variant	rs6457801
Chromosome Location	chr6:35115701-35115702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1408255	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2005	0.82[JPT][hapmap]
rs2395609	0.90[YRI][hapmap]
rs2494096	0.86[YRI][hapmap]
rs3800403	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800404	0.85[ASN][1000 genomes]
rs3800405	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711405	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4711407	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6457806	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6911268	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914081	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920194	0.84[ASN][1000 genomes]
rs6925406	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6931790	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939132	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772251	0.83[JPT][hapmap];0.88[YRI][hapmap]
rs9348964	0.89[YRI][hapmap]
rs9366881	0.84[EUR][1000 genomes]
rs9380494	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380495	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394277	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394287	0.93[CEU][hapmap]
rs942373	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs942374	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs942375	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35110200-35117000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:35110600-35116000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:35110600-35116000	Weak transcription	HSMMtube	muscle
4	chr6:35110800-35116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:35111000-35115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:35111200-35115800	Weak transcription	HSMM	muscle
7	chr6:35111400-35116000	Weak transcription	A549	lung
8	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
9	chr6:35113400-35116800	Enhancers	Fetal Stomach	stomach
10	chr6:35113800-35115800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:35113800-35116000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:35113800-35116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:35113800-35116000	Enhancers	NHDF-Ad	bronchial
14	chr6:35113800-35117400	Enhancers	Osteobl	bone
15	chr6:35113800-35117600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:35113800-35117600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:35114000-35115800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr6:35114000-35116400	Enhancers	Fetal Kidney	kidney
19	chr6:35114000-35117000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:35114000-35118000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:35114200-35116200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:35114400-35115800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:35114400-35116200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:35114400-35116400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:35114400-35117400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:35114600-35115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:35114600-35115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:35114600-35116000	Enhancers	NH-A	brain
29	chr6:35114600-35116400	Enhancers	Rectal Smooth Muscle	rectum
30	chr6:35114600-35116600	Enhancers	Fetal Lung	lung
31	chr6:35114800-35115800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:35114800-35116600	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:35115000-35116000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:35115000-35116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:35115200-35116000	Enhancers	Fetal Intestine Small	intestine
38	chr6:35115200-35116200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:35115200-35116800	Enhancers	Aorta	Aorta
40	chr6:35115200-35117000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:35115200-35117400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:35115200-35119400	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:35115200-35119800	Weak transcription	Brain Anterior Caudate	brain
44	chr6:35115400-35115800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:35115400-35115800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:35115400-35115800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:35115400-35116000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:35115400-35116800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:35115400-35117000	Enhancers	HUVEC	blood vessel
50	chr6:35115600-35115800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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