Variant report

Variant	rs9380495
Chromosome Location	chr6:35130544-35130545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35118855..35121667-chr6:35128574..35130894,2	MCF-7	breast:
2	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
3	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:
4	chr6:35119907..35121608-chr6:35130081..35132531,2	MCF-7	breast:
5	chr6:35115116..35116634-chr6:35129312..35132110,2	MCF-7	breast:
6	chr6:35129806..35132792-chr6:35197170..35199424,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS1A-1	chr6:35127447-35132003	ENSG00000244904

No data

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1408255	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800403	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3800404	0.83[ASN][1000 genomes]
rs3800405	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711405	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711407	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457801	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457802	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457804	0.94[ASN][1000 genomes]
rs6457806	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6911268	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914081	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920194	0.80[ASN][1000 genomes]
rs6925406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6931790	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939132	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380494	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394277	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942374	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs942375	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35127600-35130600	Enhancers	Adipose Nuclei	Adipose
3	chr6:35127600-35130800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:35128600-35130800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:35128600-35130800	Weak transcription	Right Atrium	heart
6	chr6:35128600-35130800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:35128600-35133200	Weak transcription	Esophagus	oesophagus
8	chr6:35128600-35133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
11	chr6:35129000-35130600	Enhancers	Stomach Mucosa	stomach
12	chr6:35129000-35130600	Enhancers	NHDF-Ad	bronchial
13	chr6:35129200-35130600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:35129200-35130600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:35129200-35130600	Weak transcription	Spleen	Spleen
16	chr6:35129200-35130600	Enhancers	Osteobl	bone
17	chr6:35129200-35133200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:35129600-35130800	Flanking Active TSS	HepG2	liver
19	chr6:35129800-35130600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:35129800-35130800	Enhancers	Fetal Lung	lung
21	chr6:35129800-35130800	Enhancers	Left Ventricle	heart
22	chr6:35129800-35130800	Enhancers	Right Ventricle	heart
23	chr6:35129800-35131000	Enhancers	Pancreas	Pancrea
24	chr6:35130000-35130800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:35130000-35131000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:35130000-35133600	Weak transcription	Fetal Stomach	stomach
27	chr6:35130200-35130600	Enhancers	Liver	Liver
28	chr6:35130200-35130800	Enhancers	Psoas Muscle	Psoas
29	chr6:35130200-35133400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:35130200-35136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:35130400-35131000	Enhancers	Aorta	Aorta
32	chr6:35130400-35131000	Enhancers	Lung	lung
33	chr6:35130400-35132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:35130400-35133200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:35130400-35133200	Weak transcription	Fetal Kidney	kidney
36	chr6:35130400-35134000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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