Variant report

Variant	rs942375
Chromosome Location	chr6:35140861-35140862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35133125..35135139-chr6:35138368..35141199,2	K562	blood:
2	chr6:35136063..35139125-chr6:35139498..35141793,3	K562	blood:
3	chr6:35139838..35142801-chr6:35145125..35146639,2	K562	blood:
4	chr6:35139023..35142448-chr6:35162991..35165848,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10080361	0.81[YRI][hapmap]
rs12189669	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1408255	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1888822	0.81[YRI][hapmap]
rs1888825	0.81[YRI][hapmap]
rs1987673	0.81[YRI][hapmap]
rs2071920	0.81[YRI][hapmap]
rs2267657	0.81[YRI][hapmap]
rs3800385	0.81[YRI][hapmap]
rs3800403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800404	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800405	0.80[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4711405	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711407	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711411	0.81[YRI][hapmap]
rs4713845	0.80[YRI][hapmap]
rs6457801	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457802	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457804	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6457806	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911268	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914081	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6925406	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931790	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6939132	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7772251	0.82[JPT][hapmap]
rs914547	0.81[YRI][hapmap]
rs9366881	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366882	0.86[YRI][hapmap]
rs9380494	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380495	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9394277	0.80[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9394287	0.93[CEU][hapmap];0.83[CHD][hapmap]
rs9394288	0.81[YRI][hapmap]
rs942373	0.88[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs942374	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462065	0.81[YRI][hapmap]
rs9469972	0.81[YRI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs942375	C6orf106	cis	cerebellum	SCAN
rs942375	NUDT3	cis	cerebellum	SCAN
rs942375	UHRF1BP1	cis	parietal	SCAN
rs942375	GLO1	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
3	chr6:35137000-35141600	Weak transcription	Fetal Heart	heart
4	chr6:35137000-35141600	Weak transcription	Left Ventricle	heart
5	chr6:35137000-35148800	Weak transcription	Right Atrium	heart
6	chr6:35137400-35142200	Enhancers	Osteobl	bone
7	chr6:35137600-35141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:35137600-35141600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:35137600-35145200	Weak transcription	Fetal Kidney	kidney
10	chr6:35137800-35141000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:35138000-35142400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:35139000-35141200	Weak transcription	HSMM	muscle
13	chr6:35139000-35142000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:35139000-35146000	Weak transcription	NHLF	lung
15	chr6:35139200-35141200	Weak transcription	NH-A	brain
16	chr6:35139200-35141400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:35139600-35141000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:35139600-35141000	Weak transcription	NHDF-Ad	bronchial
19	chr6:35139600-35141400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:35139600-35141400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:35140000-35141800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:35140200-35142000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:35140200-35142000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:35140200-35142400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:35140400-35142200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:35140400-35142200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:35140600-35141400	Enhancers	Hela-S3	cervix
28	chr6:35140600-35141600	Enhancers	HMEC	breast
29	chr6:35140600-35141800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:35140600-35141800	Enhancers	NHEK	skin
31	chr6:35140800-35141000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:35140800-35142000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:35140800-35142200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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