Variant report

Variant	rs9462065
Chromosome Location	chr6:35231168-35231169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35229256..35231730-chr6:35240126..35242967,3	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10080361	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10080411	0.84[ASN][1000 genomes]
rs1013907	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10755687	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10807150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947540	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947542	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1108709	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1194	0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12211943	0.88[ASN][1000 genomes]
rs13197551	0.84[ASN][1000 genomes]
rs13214290	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1557568	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1590381	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1888822	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1888823	0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1888824	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1888825	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894650	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894651	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894652	0.82[ASN][1000 genomes]
rs1894653	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs1929847	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1929849	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2006184	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2018373	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2032538	0.82[JPT][hapmap]
rs2071920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2183834	0.80[ASN][1000 genomes]
rs2267657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2267658	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2267660	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2267661	0.82[ASN][1000 genomes]
rs2267662	0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2267663	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267664	0.82[JPT][hapmap]
rs2284195	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2284196	0.81[ASN][1000 genomes]
rs2395614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395621	0.85[ASN][1000 genomes]
rs34156110	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3777742	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777743	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777744	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3798342	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs3800382	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs3800383	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3800385	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800386	0.82[JPT][hapmap]
rs3800387	0.82[JPT][hapmap]
rs3800388	0.82[JPT][hapmap]
rs3800392	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs3800393	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800396	0.91[EUR][1000 genomes]
rs3800401	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4711409	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711411	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711413	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4711414	0.87[ASN][1000 genomes]
rs4713841	0.90[EUR][1000 genomes]
rs4713845	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713848	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs4713850	0.88[ASN][1000 genomes]
rs4713853	0.84[ASN][1000 genomes]
rs58925593	0.82[ASN][1000 genomes]
rs62403575	0.87[ASN][1000 genomes]
rs6457812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6902523	0.84[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6906987	0.90[ASN][1000 genomes]
rs6907324	0.87[ASN][1000 genomes]
rs6907364	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6907573	0.80[ASN][1000 genomes]
rs6907795	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6913037	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6913475	0.91[ASN][1000 genomes]
rs6920432	0.90[ASN][1000 genomes]
rs6920747	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6928769	0.84[ASN][1000 genomes]
rs6930562	0.87[ASN][1000 genomes]
rs6938946	0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6940375	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941471	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72909061	0.84[ASN][1000 genomes]
rs7757316	0.90[ASN][1000 genomes]
rs7763946	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7769906	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7772212	0.87[ASN][1000 genomes]
rs7772302	0.89[ASN][1000 genomes]
rs8205	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs914547	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296144	0.84[CHB][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348970	0.89[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9366882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9366883	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368854	0.82[JPT][hapmap]
rs9368857	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9380497	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380500	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap]
rs9380501	0.84[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs9394283	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394288	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs9394289	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469958	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469964	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469975	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469979	0.85[ASN][1000 genomes]
rs9469982	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469997	0.88[ASN][1000 genomes]
rs9469998	0.90[ASN][1000 genomes]
rs965272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs968828	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs975496	0.84[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs991145	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228200-35234400	Weak transcription	Lung	lung
2	chr6:35228200-35235000	Weak transcription	Ovary	ovary
3	chr6:35228200-35243000	Weak transcription	Aorta	Aorta
4	chr6:35228400-35231400	Weak transcription	Stomach Mucosa	stomach
5	chr6:35228400-35232200	Enhancers	Fetal Heart	heart
6	chr6:35228400-35236000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:35228600-35231200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:35228600-35232400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:35228600-35232400	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:35228600-35232800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:35228600-35232800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:35228600-35235000	Weak transcription	Fetal Thymus	thymus
16	chr6:35228600-35237400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:35228600-35238000	Weak transcription	Fetal Stomach	stomach
18	chr6:35228600-35242000	Weak transcription	HSMMtube	muscle
19	chr6:35228600-35243000	Weak transcription	HSMM	muscle
20	chr6:35228600-35243000	Weak transcription	NH-A	brain
21	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:35228800-35231200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:35228800-35231800	Weak transcription	Fetal Lung	lung
26	chr6:35228800-35232000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:35228800-35232400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:35228800-35234800	Weak transcription	HUVEC	blood vessel
29	chr6:35228800-35238800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:35228800-35242400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:35228800-35242400	Weak transcription	NHEK	skin
32	chr6:35228800-35243200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:35228800-35244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
36	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
37	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:35229000-35231400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:35229000-35231800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:35229000-35231800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:35229000-35232400	Weak transcription	Small Intestine	intestine
43	chr6:35229000-35233400	Weak transcription	Gastric	stomach
44	chr6:35229000-35235000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:35229000-35237600	Weak transcription	Fetal Intestine Small	intestine
46	chr6:35229000-35241800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:35229000-35242000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:35229000-35242400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr6:35229000-35243000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum

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